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BioCypher adapter to retrieve data from Omnipath database (Networks, Intercell, Complexes, EnzymePTM and Annotations).
us, fr (code pays fourni par la source)
BioCypher adapter to retrieve data from Omnipath database (Networks, Intercell, Complexes, EnzymePTM and Annotations).
us, fr (code pays fourni par la source)
BioCypher adapter to retrieve data from Omnipath database (Networks, Intercell, Complexes, EnzymePTM and Annotations).
us, fr (code pays fourni par la source)
Dataset overview This dataset contains random samples derived from five OmniPath dataset exports: annotations, protein complexes, enzyme-substrate relationships, molecular interactions, and intercellular communication annotations. The dataset was created for software development, testing, teaching, demonstrations, workflow validation, and toy downstream examples such as …
Dataset overview This dataset contains synthetic protein–protein interactions designed to reproduce the structure of a simplified biological interaction network. Each record represents an interaction between a source protein and a target protein, together with information about the interaction type, direction, regulatory effect, …
de (code pays fourni par la source)
Jonathan Schaul, Yunfan Bai, Daniele Bottazzi, John Franken et autres
Abstract Mechanistic and functional analysis of omics data largely relies on the incorporation of prior knowledge; however, connecting metabolomics data and knowledge is a major methodological challenge. This is largely driven by the diverse prior knowledge being fragmented across many databases requiring …
de, gb, es (code pays fourni par la source)
Dataset overview This dataset contains synthetic protein - pathway associations designed to reproduce the structure of a simplified Reactome-like biological knowledge dataset. Each record represents a relationship between a protein and a biological pathway using the relationship type participates_in. The dataset was …
Dataset overview This dataset contains synthetic protein - pathway associations designed to reproduce the structure of a simplified Reactome-like biological knowledge dataset. Each record represents a relationship between a protein and a biological pathway using the relationship type participates_in. The dataset was …
Synthetic Protein Interaction Dataset This dataset contains synthetic protein-protein interaction data designed for demonstration, benchmarking, and educational purposes in computational biology and bioinformatics. The data simulates interactions between proteins from multiple species, including mouse (Mus musculus), rat (Rattus norvegicus), and human (Homo …
de (code pays fourni par la source)
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