Jonathan Schaul

OmniPath Metabo: chemical structures, interactions and mechanisms to study the metabolome

Jonathan Schaul, Yunfan Bai, Daniele Bottazzi, John Franken et autres

Abstract Mechanistic and functional analysis of omics data largely relies on the incorporation of prior knowledge; however, connecting metabolomics data and knowledge is a major methodological challenge. This is largely driven by the diverse prior knowledge being fragmented across many databases requiring …

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OmniPath: integrated knowledgebase for multi-omics analysis

Dénes Türei, Jonathan Schaul, Nicolàs Palacio‐Escat, Balázs Bohár et autres

Analysis and interpretation of omics data largely benefit from the use of prior knowledge. However, this knowledge is fragmented across resources and often is not directly accessible for analytical methods. We developed OmniPath (https://omnipathdb.org/), a database combining diverse molecular knowledge from 168 …

de, gb, tr, ru, es (code pays fourni par la source)

BioContextAI is a community hub for agentic biomedical systems

Malte B. Kuehl, Darius P. Schaub, Francesco Carli, Lukas Heumos et autres

dk, de, gb, ru, us (code pays fourni par la source)

OmniPath: integrated knowledgebase for multi-omics analysis

Dénes Türei, Jonathan Schaul, Nicolàs Palacio‐Escat, Balázs Bohár et autres

Abstract Analysis and interpretation of omics data largely benefit from the use of prior knowledge. However, this knowledge is fragmented across resources and often is not directly accessible for analytical methods. We developed OmniPath ( https://omnipathdb.org/ ), a database combining diverse molecular …

de, gb, tr, es (code pays fourni par la source)

Community-based biomedical context to unlock agentic systems

Malte B. Kuehl, Darius P. Schaub, Francesco Carli, Lukas Heumos et autres

Large language models (LLMs) face reliability challenges stemming from hallucinations and insufficient access to validated scientific resources. Existing solutions are often fragmented and limited to specific applications, hindering broader adoption and interoperability. Here, we present Biomedical Context for Artificial Intelligence (BioContextAI), an …

dk, de, gb, ru, us (code pays fourni par la source)