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Webb Miller

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275Publications signalées
54661Citations signalées
1Affiliations récentes

Les institutions déclarées

Les domaines associés

Genomics and Phylogenetic StudiesRNA and protein synthesis mechanismsChromosomal and Genetic VariationsAlgorithms and Data CompressionGenomics and Chromatin Dynamics

Les publications récentes

Accès ouvert 2022 erratum OpenAlex

Author Correction: Comparative and demographic analysis of orang-utan genomes

Devin P. Locke, LaDeana W. Hillier, Wesley C. Warren, Kim C. Worley et autres

In this Article, we reported genome sequencing data from five Sumatran and five Bornean orang-utans. In re-analysing these data, Banes et al. 1 found that eight of the ten samples were mislabelled, and we wish to correct the original publication according to …

us, gb, es, pt, it, sk, dk (code pays fourni par la source)

2 citations Nature
Accès ouvert 2020 article OpenAlex

STAGdb: a 30K SNP genotyping array and Science Gateway for Acropora corals and their dinoflagellate symbionts

Sheila A. Kitchen, Gregory Von Kuster, Kate L. Vasquez Kuntz, Hannah Reich et autres

Standardized identification of genotypes is necessary in animals that reproduce asexually and form large clonal populations such as coral. We developed a high-resolution hybridization-based genotype array coupled with an analysis workflow and database for the most speciose genus of coral, Acropora, and …

us (code pays fourni par la source)

49 citations Scientific Reports
Accès ouvert 2020 preprint OpenAlex

STAGdb: a 30K SNP genotyping array and Science Gateway for Acropora corals and their dinoflagellate symbionts

Sheila A. Kitchen, Gregory Von Kuster, Kate L. Vasquez Kuntz, Hannah Reich et autres

Abstract Standardized identification of genotypes is necessary in animals that reproduce asexually and form large clonal populations such as coral. We developed a high-resolution hybridization-based genotype array coupled with an analysis workflow and database for the most speciose genus of coral, Acropora …

us (code pays fourni par la source)

8 citations bioRxiv (Cold Spring Harbor Laboratory)
Accès ouvert 2019 article OpenAlex

Functional Architecture of Deleterious Genetic Variants in the Genome of a Wrangel Island Mammoth

Erin Fry, Sun K. Kim, Sravanthi Chigurapti, Katelyn Mika et autres

Woolly mammoths were among the most abundant cold-adapted species during the Pleistocene. Their once-large populations went extinct in two waves, an end-Pleistocene extinction of continental populations followed by the mid-Holocene extinction of relict populations on St. Paul Island ∼5,600 years ago and …

us, at (code pays fourni par la source)

14 citations Genome Biology and Evolution
Accès ouvert 2019 article OpenAlex

Genomic Variants Among Threatened Acropora Corals

Sheila A. Kitchen, Aakrosh Ratan, Oscar C. Bedoya-Reina, Richard Burhans et autres

Abstract Genomic sequence data for non-model organisms are increasingly available requiring the development of efficient and reproducible workflows. Here, we develop the first genomic resources and reproducible workflows for two threatened members of the reef-building coral genus Acropora. We generated genomic sequence …

us, gb (code pays fourni par la source)

41 citations G3 Genes Genomes Genetics
Accès ouvert 2018 preprint OpenAlex

Relaxed constraint and thermal desensitization of the cold-sensing ion channel TRPM8 in mammoths

Sravanthi Chigurapati, Mike Sulak, Webb Miller, Vincent J. Lynch

Abstract Unlike the living elephants, which live in warm tropical and subtropical habitats, mammoths lived in extreme cold environments where average winter temperatures ranged from −30° to −50°C. Like other cold adapted and artic species, mammoths evolved of suite of morphological and …

us (code pays fourni par la source)

4 citations bioRxiv (Cold Spring Harbor Laboratory)
Accès ouvert 2018 preprint OpenAlex

Genomic variants among threatened Acropora corals

Sheila A. Kitchen, Aakrosh Ratan, Oscar C. Bedoya-Reina, Rico Burhans et autres

ABSTRACT Genomic sequence data for non-model organisms are increasingly available requiring the development of efficient and reproducible workflows. Here, we develop the first genomic resources and reproducible workflows for two threatened members of the reef-building coral genus Acropora . We generated genomic …

us, gb (code pays fourni par la source)

5 citations bioRxiv (Cold Spring Harbor Laboratory)
Accès ouvert 2016 article OpenAlex

Giraffe genome sequence reveals clues to its unique morphology and physiology

Morris Agaba, Edson Ishengoma, Webb Miller, Barbara C. McGrath et autres

The origins of giraffe’s imposing stature and associated cardiovascular adaptations are unknown. Okapi, which lacks these unique features, is giraffe’s closest relative and provides a useful comparison, to identify genetic variation underlying giraffe’s long neck and cardiovascular system. The genomes of giraffe …

us, Kenya, Tanzanie, gb (code pays fourni par la source)

70 citations Nature Communications
Accès ouvert 2016 preprint OpenAlex

Genome-wide evidence for a hybrid origin of modern polar bears

Tianying Lan, Jade Yu Cheng, Aakrosh Ratan, Webb Miller et autres

Abstract Interspecific hybridization is recognized as a widespread phenomenon but measuring its extent, directionality, and adaptive importance in the evolution of species remain challenging. Polar bears possess unique adaptations to life on the Arctic sea ice, whereas their closest relatives -brown bears …

us, dk, sg (code pays fourni par la source)

8 citations bioRxiv (Cold Spring Harbor Laboratory)
2016 conference-paper OpenAlex

Whole genome sequencing of California condors is now utilized for guiding genetic management

Oliver A. Ryder, Webb Miller, Katherine Ralls, Jonathan D. Ballou et autres

The California condor is a critically endangered avian species that, in 1982, became extinct in the wild. Its survival has persevered through a captive breeding program and reintroduction efforts within its former range. As of April, 2015, 421 California condors, including 204 …

6 citations Kent Academic Repository (University of Kent)

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