Dawei Sun

Heterogeneity of Transitional Alveolar Epithelial States

Dawei Sun, SeungHye Han

us, ph (code pays fourni par la source)

Reported device problems and patient outcomes in da Vinci robotic robotic gastric and upper-gastrointestinal procedures: an FDA MAUDE database analysis

Ping Song, Dawei Sun

cn (code pays fourni par la source)

Spatiotemporal lineage tracing reveals the dynamic spatial architecture of tumor growth and metastasis

Matthew G. Jones, Dawei Sun, Kyung Hoi Min, William Colgan et autres

us, cn, gb, pa, il (code pays fourni par la source)

Gene editing of alveolar organoids reveals AT2 dysfunction due to endosomal SFTPC accumulation

Eimear N Rutherford, Dawei Sun, Kyungtae Lim, Christopher S Godbehere et autres

Alveolar type 2 (AT2) cell dysfunction is key to the development of many lung diseases including pulmonary fibrosis (PF). The underlying mechanisms often remain poorly understood due to a paucity of manipulable primary human models and lack of defined triggers. Monogenic forms …

my, us, gb, Soudan du Sud, kr, pt (code pays fourni par la source)

Gene editing of alveolar organoids reveals AT2 dysfunction due to endosomal SFTPC accumulation.

Eimear N Rutherford, Dawei Sun, Kyungtae Lim, Chris Godbehere et autres

Alveolar type 2 (AT2) cell dysfunction is key to the development of many lung diseases including pulmonary fibrosis (PF). The underlying mechanisms often remain poorly understood due to a paucity of manipulable primary human models and lack of defined triggers. Monogenic forms …

Codebase for "Spatiotemporal lineage tracing reveals the dynamic spatial architecture of tumour growth and metastasis"

Matthew G. Jones, Dawei Sun, Kyung Hoi Min, William Colgan et autres

Code & scripts for reproducing spatial-lineage analyses in Jones, Sun et al, "Spatiotemporal lineage tracing reveals the dynamic spatial architecture of tumour growth and metastasis" 2026. Cassiopeia codebase used for processing lineage data and reconstructing trees. Code for reproducing all analyses in …

us, il (code pays fourni par la source)

Codebase for "Spatiotemporal lineage tracing reveals the dynamic spatial architecture of tumour growth and metastasis"

Matthew G. Jones, Dawei Sun, Kyung Hoi Min, William Colgan et autres

Code & scripts for reproducing spatial-lineage analyses in Jones, Sun et al, "Spatiotemporal lineage tracing reveals the dynamic spatial architecture of tumour growth and metastasis" 2026. Cassiopeia codebase used for processing lineage data and reconstructing trees. Code for reproducing all analyses in …

us, il (code pays fourni par la source)

Type I interferon primes the alveolar epithelium to receive reparative signals from tissue-resident macrophages

A Vazquez, Daisy A. Hoagland, Alexander O. Mann, Yunkang Lin et autres

Abstract Lung repair in response to viral infection requires integrated communication between epithelial and immune compartments, yet the impact of antiviral mediators on epithelial regenerative capacity remains poorly defined. Here, we demonstrate that type I interferon (IFN-I) signaling primes the lung for …

us (code pays fourni par la source)

Benchmark and processed datasets for LARIS: Ligand And Receptor Interaction in Spatial transcriptomics data

Min Dai, Tivadar Torok, Dawei Sun, Gordon Fishell et autres

This repository contains benchmark and processed datasets for LARIS. It includes simulated spatial transcriptomics datasets for benchmarking, processed outputs from human tonsil Slide-tags data, and processed outputs from developing mouse cortex Stereo-seq data. For details, see the accompanying manuscript: https://www.biorxiv.org/content/10.1101/2025.11.26.690796v1 LARIS enables …

us (code pays fourni par la source)

Benchmark and processed datasets for LARIS: Ligand And Receptor Interaction in Spatial transcriptomics data

Min Dai, Tivadar Torok, Dawei Sun, Gordon Fishell et autres

This repository contains benchmark and processed datasets for LARIS. It includes simulated spatial transcriptomics datasets for benchmarking, processed outputs from human tonsil Slide-tags data, and processed outputs from developing mouse cortex Stereo-seq data. For details, see the accompanying manuscript: https://www.biorxiv.org/content/10.1101/2025.11.26.690796v1 LARIS enables …

us (code pays fourni par la source)

Processed data for study "Spatiotemporal lineage tracing reveals the dynamic spatial architecture of tumour growth and metastasis"

Matthew Jones, Dawei Sun, Joseph Min, William Colgan et autres

This repository contains processed data associated with the manuscript "Spatiotemporal lineage tracing reveals the dynamic spatial architecture of tumour growth and metastasis" (Jones*, Sun*, et al bioRxiv 2025). In this study, spatially-resolved lineage tracing was performed in the KP autochthonous mouse model …

us, cn (code pays fourni par la source)

Processed data for study "Spatiotemporal lineage tracing reveals the dynamic spatial architecture of tumour growth and metastasis"

Matthew Jones, Dawei Sun, Joseph Min, William Colgan et autres

This repository contains processed data associated with the manuscript "Spatiotemporal lineage tracing reveals the dynamic spatial architecture of tumour growth and metastasis" (Jones*, Sun*, et al bioRxiv 2025). In this study, spatially-resolved lineage tracing was performed in the KP autochthonous mouse model …

us, cn (code pays fourni par la source)