Jason Abernathy

Single-cell transcriptome characterization of channel catfish (Ictalurus punctatus) B lymphocyte cell lines

Johanna E. Aldersey, Miles D. Lange, Benjamin H. Beck, Jason Abernathy

In channel catfish ( Ictalurus punctatus ), immortalized cell lines that represent different lymphoid cell types have previously been developed and used to study teleost immune function. The 3B11 and 1G8 B cell lines were developed through mitogen stimulation and were the …

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Efficacy of an Inactivated Bacterin Vaccine Against Emerging Streptococcus dysgalactiae in Channel Catfish ( Ictalurus punctatus )

Brent M. Vuglar, Krishna P. Singha, Craig A. Shoemaker, Benjamin H. Beck et autres

Lancefield Group C Streptococcus dysgalactiae recently emerged as a catfish pathogen in the US. Reports from hatcheries suggest S. dysgalactiae causes substantial broodfish loss. We aimed to develop a challenge model and evaluate vaccine efficacy against S. dysgalactiae in juvenile channel catfish …

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Genome sequencing and hybrid assembly of novel Streptococcus dysgalactiae isolates recovered from both juvenile and broodstock channel catfish

Jason Abernathy, Craig A. Shoemaker, John D. Konvalina, Julio C. García et autres

is an emerging pathogen in fish, causing septicemia, tissue damage, and production losses. We sequenced, assembled, and annotated genomes from multiple isolates recovered from a commercial catfish farm. These genomic data advance our understanding of streptococcosis in fish and support the development …

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Acute thermal stress alters sperm swimming activity, viability, and gene expression in blue catfish, Ictalurus furcatus

Kaylan M. Price, Brian G. Bosworth, Samitha S N Liyanage, Jason Abernathy et autres

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Additional file 3 of Hepatic transcriptomics reveals immuno-metabolic interactions in juvenile channel catfish (Ictalurus punctatus) after Aeromonas hydrophila infection

Yesutor K. Soku, Miles D. Lange, Jason Abernathy, Nithin M. Sankappa et autres

Supplementary Material 3: Supplementary Table 2: Categorization of differentially expressed genes (DEGs; FDR < 0.05) in the liver of channel catfish (Ictalurus punctatus) challenged with virulent Aeromonas hydrophila, based on functional association with immune signaling or metabolic processes (carbohydrate, lipid, and protein …

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Additional file 2 of Hepatic transcriptomics reveals immuno-metabolic interactions in juvenile channel catfish (Ictalurus punctatus) after Aeromonas hydrophila infection

Yesutor K. Soku, Miles D. Lange, Jason Abernathy, Nithin M. Sankappa et autres

Supplementary Material 2: Supplementary Table 1: RNA integrity and purity metrics of liver samples used for RNA-Seq analysis of channel catfish challenged with virulent Aeromonas hydrophila. The table presents the RNA Integrity Number (RIN) and A260:A280 ratio for each liver RNA sample …

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Additional file 4 of Hepatic transcriptomics reveals immuno-metabolic interactions in juvenile channel catfish (Ictalurus punctatus) after Aeromonas hydrophila infection

Yesutor K. Soku, Miles D. Lange, Jason Abernathy, Nithin M. Sankappa et autres

Supplementary Material 4: Supplementary Table 3: The list of differentially expressed genes (DEGs, FDR < 0.05) in at least one pairwise comparison of channel catfish challenged with virulent Aeromonas hydrophila. The liver was sampled at 2, 4 and 8 hours post challenge. …

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Additional file 6 of Hepatic transcriptomics reveals immuno-metabolic interactions in juvenile channel catfish (Ictalurus punctatus) after Aeromonas hydrophila infection

Yesutor K. Soku, Miles D. Lange, Jason Abernathy, Nithin M. Sankappa et autres

Supplementary Material 6: Supplementary Table 5: The list of enriched Kyoto Encyclopedia of Genes and Genomes (KEGG) derived from differentially expressed genes (DEGs, FDR < 0.05) in the liver of channel catfish challenged with virulent Aeromonas hydrophila. The analysis was conducted on …

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Additional file 1 of Hepatic transcriptomics reveals immuno-metabolic interactions in juvenile channel catfish (Ictalurus punctatus) after Aeromonas hydrophila infection

Yesutor K. Soku, Miles D. Lange, Jason Abernathy, Nithin M. Sankappa et autres

Supplementary Material 1.

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Hepatic transcriptomics reveals immuno-metabolic interactions in juvenile channel catfish (Ictalurus punctatus) after Aeromonas hydrophila infection

Yesutor K. Soku, Miles D. Lange, Jason Abernathy, Nithin M. Sankappa et autres

Abstract Background In aquaculture, disease outbreaks occur amidst complex husbandry factors like feeding schedule and incidental injury. The liver, a central immunometabolic organ, integrates these cues, but the systems-level transcriptional mechanisms governing its response to concurrent stress are poorly defined in channel …

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Additional file 3 of Hepatic transcriptomics reveals immuno-metabolic interactions in juvenile channel catfish (Ictalurus punctatus) after Aeromonas hydrophila infection

Yesutor K. Soku, Miles D. Lange, Jason Abernathy, Nithin M. Sankappa et autres

Supplementary Material 3: Supplementary Table 2: Categorization of differentially expressed genes (DEGs; FDR < 0.05) in the liver of channel catfish (Ictalurus punctatus) challenged with virulent Aeromonas hydrophila, based on functional association with immune signaling or metabolic processes (carbohydrate, lipid, and protein …

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Additional file 1 of Hepatic transcriptomics reveals immuno-metabolic interactions in juvenile channel catfish (Ictalurus punctatus) after Aeromonas hydrophila infection

Yesutor K. Soku, Miles D. Lange, Jason Abernathy, Nithin M. Sankappa et autres

Supplementary Material 1.

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