Qiannan Ye

Style Length in Wild Rhododendron: From Cryptic Genetic Variation to Efficient Genome Prediction Strategy

Qirui Liu, Tingting Hang, Qiannan Ye, Zhenzhen Wu et autres

cn (code pays fourni par la source)

SSR_VibraProfiler: a Python package for accurate classification of varieties using SSRs with intra-variety specificity and inter-variety polymorphism

Chenhao Jiang, Chuan Dong, Zhenzhen Wu, Chenyi Shi et autres

BACKGROUND: Simple sequence repeats (SSRs) are widely used as molecular markers; however, traditional development of SSR molecular markers heavily relies on experimental methods. The advancement of modern sequencing technology has provided the possibility of directly extracting SSR characteristics from sequencing data and …

cn (code pays fourni par la source)

Chromosome-level genome assembly of the tetraploid medicinal and natural dye plant Persicaria tinctoria

Qing Li, Hui Huang, Ruyan Fan, Qiannan Ye et autres

Persicaria tinctoria (2n = 40) is an important traditional medicinal plant and natural dye source within the genus Persicaria. P. tinctoria has been utilized for its antibacterial, antiviral, anti-inflammatory, and tumor treatment properties. Additionally, it has served as a natural blue dye …

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Genome and GWAS analysis identified genes significantly related to phenotypic state of Rhododendron bark

Qiannan Ye, Lu Zhang, Qing Li, Yaliang Ji et autres

Abstract As an important horticultural plant, Rhododendron is often used in urban greening and landscape design. However, factors such as the high rate of genetic recombination, frequent outcrossing in the wild, weak linkage disequilibrium, and the susceptibility of gene expression to environmental …

cn (code pays fourni par la source)

Gene fusion as an important mechanism to generate new genes in the genus Oryza

Yanli Zhou, Chengjun Zhang, Li Zhang, Qiannan Ye et autres

BACKGROUND: Events of gene fusion have been reported in several organisms. However, the general role of gene fusion as part of new gene origination remains unknown. RESULTS: We conduct genome-wide interrogations of four Oryza genomes by designing and implementing novel pipelines to …

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Additional file 7 of Gene fusion as an important mechanism to generate new genes in the genus Oryza

Yanli Zhou, Chengjun Zhang, Li Zhang, Qiannan Ye et autres

Additional file 7. Correlation between the maximum FPKM value of long-homologous copies and the short-homologous copies in four Oryza species.

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Additional file 4 of Gene fusion as an important mechanism to generate new genes in the genus Oryza

Yanli Zhou, Chengjun Zhang, Li Zhang, Qiannan Ye et autres

Additional file 4. FPKM of fusion gene and short copy homologs in O. sativa v.g. japonica, O. barthii, O. glaberrima, O. punctate, O. branchyantha and Leersia.

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Additional file 2 of Gene fusion as an important mechanism to generate new genes in the genus Oryza

Yanli Zhou, Chengjun Zhang, Li Zhang, Qiannan Ye et autres

Additional file 2. Candidate fusion gene presented in four focus species.

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Additional file 9 of Gene fusion as an important mechanism to generate new genes in the genus Oryza

Yanli Zhou, Chengjun Zhang, Li Zhang, Qiannan Ye et autres

Additional file 9. Transposable element retrieved from O. sativa v.g. japonica fusion genes.

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Additional file 10 of Gene fusion as an important mechanism to generate new genes in the genus Oryza

Yanli Zhou, Chengjun Zhang, Li Zhang, Qiannan Ye et autres

Additional file 10. Gene structure re-annotation of species-specific fusion gene in four focus species.

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Additional file 6 of Gene fusion as an important mechanism to generate new genes in the genus Oryza

Yanli Zhou, Chengjun Zhang, Li Zhang, Qiannan Ye et autres

Additional file 6. Correlation of O. japonica fusion gene and its short copies FPKM value in different tissues.

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Additional file 8 of Gene fusion as an important mechanism to generate new genes in the genus Oryza

Yanli Zhou, Chengjun Zhang, Li Zhang, Qiannan Ye et autres

Additional file 8. The generation patterns of fusion genes.

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