Matthew D. Mastropaolo

Writing Microbiology Resource Announcements (MRA)

Arturo Diaz, Julia Y. Lee‐Soety, Shima Chaudhary, Denise L. Monti et autres

After annotating their phage genomes, students will write a manuscript describing the phage(s) they discovered. The manuscript will be published on the pre-print repository BioRxiv, where it will be indexed and searchable via PubMed and can be readily referenced. Faculty and students …

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Science communication tools: rubrics for generating posters and manuscripts that are authentic to the practice of science

Tamarah L. Adair, Swati Agrawal, Yesmi Ahumada-Santos, Regina V. Alvarez et autres

Traditional undergraduate science courses often prioritize content mastery over authentic engagement with the scientific process. Course-based research, also referred to as course-based undergraduate research experiences (CUREs), addresses this limitation by immersing students in authentic scientific practice. In course-based research, assessment practices can …

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Science communication tools: rubrics for generating posters and manuscripts that are authentic to the practice of science

Tamarah L. Adair, Swati Agrawal, Yesmi Ahumada-Santos, Regina V. Alvarez et autres

Traditional undergraduate science courses often prioritize content mastery over authentic engagement with the scientific process. Course-based research, also referred to as course-based undergraduate research experiences (CUREs), addresses this limitation by immersing students in authentic scientific practice. In course-based research, assessment practices can …

Cluster FQ Annotation Report

Matthew D. Mastropaolo, Jennifer Ingram, Véronique A. Delesalle

This report describes features of actinobacteriophages assigned to Cluster FQ. Additional phages may have been added to the phagesDB database since this report was generated.

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OC26 Whole Genome Sequencing of Adenovirus genotypes and clinical implications in pediatric patients

Luna Colagrossi, Lorena Forqué, Victor L. Fox, Rossana Scutari et autres

The professional identity of STEM faculty as instructors of course-based research experiences

David I. Hanauer, Richard M. Alvey, Ping An, Christa T. Bancroft et autres

The professional identity of scientists has historically been cultivated to value research over teaching, which can undermine initiatives that aim to reform science education. Course-Based Research Experiences (CRE) and the inclusive Research and Education Communities (iREC) are two successful and impactful reform …

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An inclusive Research and Education Community (iREC) model to facilitate undergraduate science education reform

Denise L. Monti, Julia C. Gill, Tamarah L. Adair, Sandra D. Adams et autres

Over the last two decades, there have been numerous initiatives to improve undergraduate student outcomes in STEM. One model for scalable reform is the inclusive Research Education Community (iREC). In an iREC, STEM faculty from colleges and universities across the nation are …

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Complete genome sequences of seven Microbacterium foliorum phages Albedo, Kenzers, Swervy, Cranjis, JaimeB, Fullmetal, and Stormbreaker

Keyshla Valentin Caban, Elizabeth Kalesnik, Kaitlyn A. Green, Christopher J. Negro et autres

ABSTRACT Seven bacteriophages were isolated from soil in Pennsylvania and Wisconsin using the host Microbacterium foliorum . These bacteriophages range in the number of predicted genes encoded, from 25 to 91, and are distributed across actinobacteriophage clusters EB, EC, EE, and EK.

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Models of classroom assessment for course-based research experiences

David I. Hanauer, Tong Zhang, Mark J Graham, Sandra D. Adams et autres

Course-based research pedagogy involves positioning students as contributors to authentic research projects as part of an engaging educational experience that promotes their learning and persistence in science. To develop a model for assessing and grading students engaged in this type of learning …

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Genome Sequences of Five Microbacterium foliorum Phages, GaeCeo, NeumannU, Eightball, Chivey, and Hiddenleaf

Matthew D. Mastropaolo, Patricia C. Fallest-Strobl, Daekwon M. Sequira, Davia D. Campbell et autres

Five siphoviruses were isolated from soil in southeastern Pennsylvania using Microbacterium foliorum. Bacteriophages NeumannU and Eightball have 25 predicted genes, Chivey and Hiddenleaf have 87 genes, and GaeCeo has 60 genes. Based on gene content similarity to sequenced actinobacteriophages, these five phages …

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Instructional Models for Course-Based Research Experience (CRE) Teaching

David I. Hanauer, Mark J Graham, Rachel J. Arnold, Mary A. Ayuk et autres

The course-based research experience (CRE) with its documented educational benefits is increasingly being implemented in science, technology, engineering, and mathematics education. This article reports on a study that was done over a period of 3 years to explicate the instructional processes involved …

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Understanding Restriction Enzyme Digests

Swati Agrawal, Sara Anderson, Dustin C. Edwards, Bryan Gibb et autres

Prior to submitting genomic DNA for sequencing, SEA students perform a restriction endonuclease digest with several enzymes, which provides a fast and cost-effective way of quickly screening isolated phages. The pattern of bands on the gel should be unique except for very …

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