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Profil bibliographique

Trent E. Balius

Informations fournies par OpenAlex. Research Africa ne déduit ni nationalité, ni poste, ni coordonnées personnelles.

46Publications signalées
4084Citations signalées
3Affiliations récentes

Les institutions déclarées

Les domaines associés

Protein Structure and DynamicsComputational Drug Discovery MethodsEnzyme Structure and FunctionGlycosylation and Glycoproteins ResearchClick Chemistry and Applications

Les publications récentes

Accès ouvert 2026 article OpenAlex

Disulfide tethering reveals cryptic pockets in oncogenic KRAS

Trent E. Balius, Marcin D. Dyba, Vandana Kumari, J. L. Denson et autres

Disulfide tethering is a site-directed method of drug discovery used to identify hits for challenging targets. We applied tethering to target oncogenic KRAS, a small GTPase once considered undruggable due to its high nucleotide affinity and a perceived absence of binding sites. …

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0 citations Communications Chemistry
2026 conference-abstract OpenAlex

Abstract B002: Structural and functional analysis of the resistance mechanisms of KRAS-G12C secondary mutations to switch-II pocket inhibitors

Matthew J. Whitley, Marcin D. Dyba, Mayukh Chakrabarti, Brian Smith et autres

Abstract Acquired resistance remains a major challenge in the treatment of KRAS-G12C-driven cancers. Secondary mutations in KRAS frequently arise under the selective pressure of KRAS-G12C inhibitors, undermining therapeutic efficacy. These resistance mutations predominantly cluster within or adjacent to the Switch-II pocket, the …

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0 citations Cancer Research
2026 conference-abstract OpenAlex

Abstract B006: Screening a disulfide library against engineered cysteine RAS mutants reveal cryptic binding pockets

Trent E. Balius, Marcin D. Dyba, Vandana Kumari, John-Paul Denson et autres

Abstract Disulfide tethering is a site-directed method for identifying hits of challenging drug targets. We describe the creation of a screening library of over 2000 disulfide fragments. We have screened 1000+ fragments from this library against 83 engineered KRAS cysteine mutants to …

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0 citations Cancer Research
Accès ouvert 2025 article OpenAlex

Development of Receptor Desolvation Scoring and Covalent Sampling in DOCK 6: Methods Evaluated on a RAS Test Set

Yu-Hong Tan, Mayukh Chakrabarti, Reed M. Stein, Lauren E. Prentis et autres

Molecular docking methods are widely used in drug discovery efforts. RAS proteins are important cancer drug targets, and are useful systems for evaluating docking methods, including accounting for solvation effects and covalent small molecule binding. Water often plays a key role in …

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7 citations Journal of Chemical Information and Modeling
Accès ouvert 2024 preprint OpenAlex

Development of receptor desolvation scoring and covalent sampling in DOCK 6: methods evaluated on a RAS test set

Yu-Hong Tan, Mayukh Chakrabarti, Reed M. Stein, Lauren E. Prentis et autres

Molecular docking methods are widely used in drug discovery efforts. RAS proteins are important cancer drug targets, and are useful systems for evaluating docking methods, including accounting for solvation effects and covalent small molecule binding. Water often plays a key role in …

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0 citations ChemRxiv
Accès ouvert 2024 article OpenAlex

Structural dynamics of RAF1-HSP90-CDC37 and HSP90 complexes reveal asymmetric client interactions and key structural elements

Lorenzo I. Finci, Mayukh Chakrabarti, Gülçin Gülten, Joseph D Finney et autres

RAF kinases are integral to the RAS-MAPK signaling pathway, and proper RAF1 folding relies on its interaction with the chaperone HSP90 and the cochaperone CDC37. Understanding the intricate molecular interactions governing RAF1 folding is crucial for comprehending this process. Here, we present …

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21 citations Communications Biology
Accès ouvert 2023 article OpenAlex

DOCK 6: Incorporating hierarchical traversal through precomputed ligand conformations to enable large‐scale docking

Trent E. Balius, Yu-Hong Tan, Mayukh Chakrabarti

To allow DOCK 6 access to unprecedented chemical space for screening billions of small molecules, we have implemented features from DOCK 3.7 into DOCK 6, including a search routine that traverses precomputed ligand conformations stored in a hierarchical database. We tested them …

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19 citations Journal of Computational Chemistry
Accès ouvert 2023 preprint OpenAlex

DOCK 6: Incorporating hierarchical traversal through precomputed ligand conformations to enable large-scale docking

Trent E. Balius, Mayukh Chakrabarti, Y. Stanley Tan

To allow DOCK 6 access to unprecedented chemical space for screening billions of small molecules, we have implemented features from DOCK 3.7 into DOCK 6, including a search routine that traverses precomputed ligand conformations stored in a hierarchical database. We tested them …

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0 citations ChemRxiv
Accès ouvert 2021 article OpenAlex

Energy penalties enhance flexible receptor docking in a model cavity

Anna Sophia Kamenik, Isha Singh, Parnian Lak, Trent E. Balius et autres

Significance The dynamic nature of biomolecules is typically neglected in docking screens for ligand discovery. The key to benefitting from various receptor conformations is not only structural but also thermodynamic information. Here, we test a general approach that uses conformational preferences from …

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33 citations Proceedings of the National Academy of Sciences

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