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Profil bibliographique

Nicole C. Silvester

Informations fournies par OpenAlex. Research Africa ne déduit ni nationalité, ni poste, ni coordonnées personnelles.

23Publications signalées
662Citations signalées
1Affiliations récentes

Les institutions déclarées

Les domaines associés

Genomics and Phylogenetic StudiesCardiac electrophysiology and arrhythmiasIon channel regulation and functionEnvironmental DNA in Biodiversity StudiesNeuroscience and Neural Engineering

Les publications récentes

Accès ouvert 2020 article OpenAlex

Accelerating surveillance and research of antimicrobial resistance – an online repository for sharing of antimicrobial susceptibility data associated with whole-genome sequences

Sébastien Matamoros, René S. Hendriksen, Bálint Pataki, Nima Pakseresht et autres

Antimicrobial resistance (AMR) is an emerging threat to modern medicine. Improved diagnostics and surveillance of resistant bacteria require the development of next-generation analysis tools and collaboration between international partners. Here, we present the 'AMR Data Hub', an online infrastructure for storage and …

nl, dk, hu, gb, fr (code pays fourni par la source)

12 citations Microbial Genomics
Accès ouvert 2019 preprint OpenAlex

The COMPARE Data Hubs

Clara Amid, Nima Pakseresht, Nicole C. Silvester, Suran Jayathilaka et autres

Abstract Data sharing enables research communities to exchange findings and build upon the knowledge that arises from their discoveries. Areas of public and animal health as well as food safety would benefit from rapid data sharing when it comes to emergencies. However, …

gb, dk, hu, be, Ouganda, de, nl (code pays fourni par la source)

4 citations bioRxiv (Cold Spring Harbor Laboratory)
Accès ouvert 2019 preprint OpenAlex

Accelerating surveillance and research of antimicrobial resistance – an online repository for sharing of antimicrobial susceptibility data associated with whole genome sequences

Sébastien Matamoros, René S. Hendriksen, Bálint Pataki, Nima Pakseresht et autres

Abstract Antimicrobial resistance (AMR) is an emerging threat to modern medicine. Improved diagnostics and surveillance of resistant bacteria require the development of next generation analysis tools and collaboration between international partners. Here, we present the “AMR data hub”, an online infrastructure for …

nl, dk, hu, gb (code pays fourni par la source)

6 citations bioRxiv (Cold Spring Harbor Laboratory)
Accès ouvert 2019 article OpenAlex

The COMPARE Data Hubs

Clara Amid, Nima Pakseresht, Nicole C. Silvester, Suran Jayathilaka et autres

Data sharing enables research communities to exchange findings and build upon the knowledge that arises from their discoveries. Areas of public and animal health as well as food safety would benefit from rapid data sharing when it comes to emergencies. However, ethical, …

gb, dk, hu, be, de, nl, it (code pays fourni par la source)

70 citations Database
Accès ouvert 2018 article OpenAlex

The European Nucleotide Archive in 2018

Peter W. Harrison, Blaise Alako, Clara Amid, Ana M. Cerdeño-Tárraga et autres

The European Nucleotide Archive (ENA; https://www.ebi.ac.uk/ena), provided from EMBL-EBI, has for more than three decades been responsible for archiving the world's public sequencing data and presenting this important resource to the scientific community to support and accelerate the global research effort. Here, …

gb (code pays fourni par la source)

128 citations Nucleic Acids Research
Accès ouvert 2017 article OpenAlex

The European Nucleotide Archive in 2017

Nicole C. Silvester, Blaise Alako, Clara Amid, Ana M. Cerdeño-Tárraga et autres

For 35 years the European Nucleotide Archive (ENA; https://www.ebi.ac.uk/ena) has been responsible for making the world's public sequencing data available to the scientific community. Advances in sequencing technology have driven exponential growth in the volume of data to be processed and stored …

gb (code pays fourni par la source)

103 citations Nucleic Acids Research
Accès ouvert 2016 article OpenAlex

European Nucleotide Archive in 2016

Ana Luisa Toribio, Blaise Alako, Clara Amid, Ana M. Cerdeño-Tárraga et autres

The European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena) offers a rich platform for data sharing, publishing and archiving and a globally comprehensive data set for onward use by the scientific community. With a broad scope spanning raw sequencing reads, genome assemblies and functional annotation, …

gb (code pays fourni par la source)

85 citations Nucleic Acids Research
Accès ouvert 2016 other OpenAlex

Sustainable biocuration of functional annotation at the European Nucleotide Archive

Richard Gibson, Clara Amid, Ana M. Cerdeño-Tárraga, Petra ten Hoopen et autres

The European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena) hosts, maintains and presents nucleotide sequence data along with associated sample and experimental metadata. Functional annotation has always been hand-in-hand with the storage of traditional sequence records, providing an interpretation of genetic features together with the …

gb (code pays fourni par la source)

0 citations
Accès ouvert 2015 article OpenAlex

Biocuration of functional annotation at the European nucleotide archive

Richard Gibson, Blaise Alako, Clara Amid, Ana M. Cerdeño-Tárraga et autres

The European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena) is a repository for the submission, maintenance and presentation of nucleotide sequence data and related sample and experimental information. In this article we report on ENA in 2015 regarding general activity, notable published data sets and …

gb (code pays fourni par la source)

39 citations Nucleic Acids Research
Accès ouvert 2014 article OpenAlex

Content discovery and retrieval services at the European Nucleotide Archive

Nicole C. Silvester, Blaise Alako, Clara Amid, Ana M. Cerdeño-Tárraga et autres

The European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena) is Europe's primary resource for nucleotide sequence information. With the growing volume and diversity of public sequencing data comes the need for increased sophistication in data organisation, presentation and search services so as to maximise its …

gb (code pays fourni par la source)

38 citations Nucleic Acids Research
Accès ouvert 2014 article OpenAlex

A New System for Profiling Drug-Induced Calcium Signal Perturbation in Human Embryonic Stem Cell–Derived Cardiomyocytes

Kimberley J. Lewis, Nicole C. Silvester, Steven R. Barberini-Jammaers, Sammy A. Mason et autres

The emergence of human stem cell-derived cardiomyocyte (hSCCM)-based assays in the cardiovascular (CV) drug discovery sphere requires the development of improved systems for interrogating the rich information that these cell models have the potential to yield. We developed a new analytical framework …

gb (code pays fourni par la source)

14 citations SLAS DISCOVERY
Accès ouvert 2013 article OpenAlex

Assembly information services in the European Nucleotide Archive

Nima Pakseresht, Blaise Alako, Clara Amid, Ana M. Cerdeño-Tárraga et autres

The European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena) is a repository for the world public domain nucleotide sequence data output. ENA content covers a spectrum of data types including raw reads, assembly data and functional annotation. ENA has faced a dramatic growth in genome …

gb (code pays fourni par la source)

40 citations Nucleic Acids Research

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