Ariane Belka

Metagenomics for broad and improved parasite detection: a proof-of-concept study using swine faecal samples

Claudia Wylezich, Ariane Belka, Dennis Hanke, Martin Beer et autres

Efficient and reliable identification of emerging pathogens is crucial for the design and implementation of timely and proportionate control strategies. This is difficult if the pathogen is so far unknown or only distantly related with known pathogens. Diagnostic metagenomics - an undirected, …

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Proficiency Testing of Virus Diagnostics Based on Bioinformatics Analysis of Simulated In Silico High-Throughput Sequencing Data Sets

Annika Brinkmann, Andreas Andrusch, Ariane Belka, Claudia Wylezich et autres

data set of Illumina HiSeq sequences was provided to 13 different European institutes for bioinformatics analysis to identify viral pathogens in high-throughput sequence data. Comparison of the participants' analyses shows that the use of different tools, programs, and databases for bioinformatics analyses …

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The COMPARE Data Hubs

Clara Amid, Nima Pakseresht, Nicole C. Silvester, Suran Jayathilaka et autres

Abstract Data sharing enables research communities to exchange findings and build upon the knowledge that arises from their discoveries. Areas of public and animal health as well as food safety would benefit from rapid data sharing when it comes to emergencies. However, …

gb, dk, hu, be, Ouganda, de, nl (code pays fourni par la source)

The COMPARE Data Hubs

Clara Amid, Nima Pakseresht, Nicole C. Silvester, Suran Jayathilaka et autres

Data sharing enables research communities to exchange findings and build upon the knowledge that arises from their discoveries. Areas of public and animal health as well as food safety would benefit from rapid data sharing when it comes to emergencies. However, ethical, …

gb, dk, hu, be, de, nl, it (code pays fourni par la source)

LVQ-KNN: Composition-based DNA/RNA binning of short nucleotide sequences utilizing a prototype-based k-nearest neighbor approach

Ariane Belka, Mareike Fischer, Anne Pohlmann, Martin Beer et autres

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Detection of novel viral pathogens by adaptive diagnostics to prevent epidemics

Leonie Kauer, Dirk W. Höper, Maria Jenckel, Ariane Belka et autres

DetektiVir: Deployment of a generic diagnostic workflow for the de-novo detection of new viral pathogens

Maria Jenckel, Ariane Belka, Dirk W. Höper, Anne Pohlmann et autres

RIEMS – A Smart Way To Explore The Unknown

Ariane Belka, Maria Jenckel, Anne Pohlmann, Martin Beer et autres

The Accessory Genome of Shiga Toxin-Producing Escherichia coli Defines a Persistent Colonization Type in Cattle

Stefanie Barth, Christian Menge, Inga Eichhorn, Torsten Semmler et autres

UNLABELLED: Shiga toxin-producing Escherichia coli (STEC) strains can colonize cattle for several months and may, thus, serve as gene reservoirs for the genesis of highly virulent zoonotic enterohemorrhagic E. coli (EHEC). Attempts to reduce the human risk for acquiring EHEC infections should …

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Finding the unknown: New approaches to taxonomic classification of nucleotide sequences

Ariane Belka, Dirk W. Höper, Anne Pohlmann, Melina Fischer et autres