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Profil bibliographique

Joshua A. Baller

Informations fournies par OpenAlex. Research Africa ne déduit ni nationalité, ni poste, ni coordonnées personnelles.

34Publications signalées
3770Citations signalées
2Affiliations récentes

Les institutions déclarées

Les domaines associés

CRISPR and Genetic EngineeringChromosomal and Genetic VariationsPlant Virus Research StudiesCancer Genomics and DiagnosticsDNA Repair Mechanisms

Les publications récentes

Accès ouvert 2024 preprint OpenAlex

Comprehensive protease specificity profiling

Bo Zhu, Michael D. Lane, Joshua A. Baller, Pratik Jagtap et autres

Abstract Protease enzymes are of great importance in medicine, industry, and as research tools. Despite the crucial need for detailed knowledge of their proteolytic cleavage specificity, many proteases are poorly characterized. We present a method for fully characterizing the cleavage specificity of …

jp, us (code pays fourni par la source)

3 citations bioRxiv (Cold Spring Harbor Laboratory)
2022 conference-paper OpenAlex

A Partnership Framework for Scaling a Workforce of Research Cyberprofessionals

Joshua A. Baller, Christine Henzler, James C. Wilgenbusch

The research cyberinfrastructure community has long recognized challenges recruiting, developing, retaining and scaling a strong workforce given the irregular cycle of sponsored research projects and institutional initiatives. The challenges are myriad, and across academic institutions, often vary based on the particular route …

us (code pays fourni par la source)

0 citations Practice and Experience in Advanced Research Computing
Accès ouvert 2022 article OpenAlex

Using the Daphnia magna Transcriptome to Distinguish Water Source: Wetland and Stormwater Case Studies

Mark D. Jankowski, David J. Fairbairn, Joshua A. Baller, Benjamin M. Westerhoff et autres

A major challenge in ecotoxicology is accurately and sufficiently measuring chemical exposures and biological effects given the presence of complex and dynamic contaminant mixtures in surface waters. It is impractical to quantify all chemicals in such matrices over space and time, and …

us (code pays fourni par la source)

8 citations Environmental Toxicology and Chemistry
2021 conference-abstract OpenAlex

Abstract 1410: Chemotherapy resistance pathways identified in ovarian cancer patients treated with neoadjuvant chemotherapy using single cell RNA sequencing of matched tumor biopsies

Timothy K. Starr, Shobhana Talukdar, Zenas Chang, Jason Cepela et autres

Abstract Background: Women with ovarian cancer suffer from a high rate of mortality due to the development of chemotherapy resistance. To better understand the mechanisms of chemotherapy resistance we initiated a prospective study of women with ovarian cancer, which we refer to …

us (code pays fourni par la source)

0 citations Cancer Research
2020 conference-abstract OpenAlex

Abstract B72: Single-cell analysis of chemotherapy resistance in ovarian cancer

Boris Winterhoff, Shobhana Talukdar, Zenas Chang, Jason Cepela et autres

Abstract A majority of women diagnosed with ovarian cancer will relapse after treatment, and most of these recurrent cancers will become resistant to standard chemotherapies. To better understand the mechanisms of chemotherapy resistance, we have initiated a prospective study to comprehensively analyze …

us (code pays fourni par la source)

0 citations Clinical Cancer Research
Accès ouvert 2019 conference-paper OpenAlex

A Comprehensive Campus-based Approach to Address the Opportunities and Challenges Posed by Data Intensive Research

James C. Wilgenbusch, Carla Bates, Lisa Johnston, Joshua A. Baller et autres

Faced with escalating expenses related to data storage needs and a capable set of on campus storage service providers, the University of Minnesota (UMN) developed a comprehensive framework to better address current and emerging challenges and opportunities brought by data intensive research. …

us (code pays fourni par la source)

0 citations Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (learning)
2019 conference-paper OpenAlex

CHURP

Joshua A. Baller, Thomas J. Y. Kono, Adam Herman, Ying Zhang

Progressive decreases in the cost of DNA sequencing have contributed to a decades-long exponential increase in the production of new sequencing datasets. The processing of these datasets has in turn led biology, a field that has traditionally relied on local "lab" servers …

us (code pays fourni par la source)

34 citations Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (learning)
Accès ouvert 2018 article OpenAlex

Comprehensive Functional Analysis of the Enterococcus faecalis Core Genome Using an Ordered, Sequence-Defined Collection of Insertional Mutations in Strain OG1RF

Jennifer L. Dale, Kenneth B. Beckman, Julia L. E. Willett, Jennifer L. Nilson et autres

The robust ability of Enterococcus faecalis to survive outside the host and to spread via oral-fecal transmission and its high degree of intrinsic and acquired antimicrobial resistance all complicate the treatment of hospital-acquired enterococcal infections. The conserved E. faecalis core genome serves …

us (code pays fourni par la source)

92 citations mSystems

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