Accès ouvert
2025
article
OpenAlex
Christina Papastolopoulou, Ronald Nieuwenhuis, Sven Warris, Linda V. Bakker et autres
ABSTRACT This study presents three genome assemblies within the Capsicum genus, enabling comprehensive comparative analyses for the Annuum and Baccatum complexes within the genus. We produced highly continuous assemblies of the nuclear genomes and complete chloroplast assemblies. Subsequent genome annotation identified 34,580 …
nl, th
(code pays fourni par la source)
Accès ouvert
2025
preprint
OpenAlex
Christina Papastolopoulou, Ronald Nieuwenhuis, Sven Warris, Linda V. Bakker et autres
Abstract This study presents three genome assemblies within the Capsicum genus, enabling comprehensive comparative analyses for the Annuum and Baccatum complexes within the genus. We produced highly continuous assemblies of the nuclear genomes and complete chloroplast assemblies. Subsequent genome annotation identified 34,580 …
us, nl, th
(code pays fourni par la source)
Accès ouvert
2023
article
OpenAlex
Nam V. Hoang, Dêêdi E. O. Sogbohossou, Wei Xiong, Conor J. C. Simpson et autres
Gynandropsis gynandra (Cleomaceae) is a cosmopolitan leafy vegetable and medicinal plant, which has also been used as a model to study C4 photosynthesis due to its evolutionary proximity to C3 Arabidopsis (Arabidopsis thaliana). Here, we present the genome sequence of G. gynandra, …
Bénin, gb, de, nl, us, cn, Kenya
(code pays fourni par la source)
Accès ouvert
2022
preprint
OpenAlex
Nam V. Hoang, Dêêdi E. O. Sogbohossou, Wei Xiong, Conor J. C. Simpson et autres
ABSTRACT Gynandropsis gynandra (Cleomaceae) is a cosmopolitan leafy vegetable and medicinal plant, which has also been used as a model to study C4 photosynthesis due to its evolutionary proximity to Arabidopsis. Here, we present a high-quality genome sequence of G. gynandra , …
nl, Bénin, gb, cn, de, Kenya, us
(code pays fourni par la source)
Accès ouvert
2021
article
OpenAlex
Yanting Wang, Hernando G. Suárez Duran, Jan C. van Haarst, Elio G. W. M. Schijlen et autres
BACKGROUND: Phosphorus (P) is an essential macronutrient for plant growth and development. Upon P shortage, plant responds with massive reprogramming of transcription, the Phosphate Starvation Response (PSR). In parallel, the production of strigolactones (SLs)-a class of plant hormones that regulates plant development …
nl
(code pays fourni par la source)
Accès ouvert
2021
dataset
OpenAlex
Yanting Wang, Hernando G. Suárez Duran, Jan C. van Haarst, Elio G. W. M. Schijlen et autres
Additional file 1:Suppl. Fig. 1. Experimental design of the P starvation RNAseq experiment. Suppl. Fig. 2. KEGG pathway enrichment for induced (A) and repressed (B) DEGs in tomato roots upon P starvation and P replenishment. Suppl. Fig. 3. Heatmap showing fold change …
nl
(code pays fourni par la source)
Accès ouvert
2019
preprint
OpenAlex
Prashant S. Hosmani, Mirella Flores-Gonzalez, Henri van de Geest, Florian Maumus et autres
Abstract The original Heinz 1706 reference genome was produced by a large team of scientists from across the globe from a variety of input sources that included 454 sequences in addition to full-length BACs, BAC and fosmid ends sequenced with Sanger technology. …
us, nl, fr
(code pays fourni par la source)
Accès ouvert
2016
article
OpenAlex
Karen J. Kloth, Gerrie L. Wiegers, Jacqueline Busscher‐Lange, Jan C. van Haarst et autres
Aphids induce many transcriptional perturbations in their host plants, but the signalling cascades responsible and the effects on plant resistance are largely unknown. Through a genome-wide association (GWA) mapping study in Arabidopsis thaliana, we identified WRKY22 as a candidate gene associated with …
nl, gb, us
(code pays fourni par la source)
Accès ouvert
2014
article
OpenAlex
Saulo Alves Aflitos, Elio G. W. M. Schijlen, Hans de Jong, Dick de Ridder et autres
We explored genetic variation by sequencing a selection of 84 tomato accessions and related wild species representative of the Lycopersicon, Arcanum, Eriopersicon and Neolycopersicon groups, which has yielded a huge amount of precious data on sequence diversity in the tomato clade. Three …
us, nl, cn, dk, th, es, fr
(code pays fourni par la source)
Accès ouvert
2013
article
OpenAlex
Rumyana Karlova, Jan C. van Haarst, Chris A. Maliepaard, Henri van de Geest et autres
MicroRNAs (miRNAs) play important roles in plant development through regulation of gene expression by mRNA degradation or translational inhibition. Despite the fact that tomato (Solanum lycopersicum) is the model system for studying fleshy fruit development and ripening, only a few experimentally proven …
nl
(code pays fourni par la source)
Accès ouvert
2012
article
OpenAlex
Hideki Hirakawa, Erika Asamizu, K Shirasawa, Sachiko Isobe et autres
This paper reports the genome sequence of domesticated tomato, a major crop plant, and a draft sequence for its closest wild relative; comparative genomics reveal very little divergence between the two genomes but some important differences with the potato genome, another important …
jp, us, ch, cn, it, nl, es, tw, be, il, de, gb, in
(code pays fourni par la source)
Accès ouvert
2009
article
OpenAlex
Sander Peters, Erwin Datema, Dóra Szinay, M. J. van Staveren et autres
We studied the physical and genetic organization of chromosome 6 of tomato (Solanum lycopersicum) cv. Heinz 1706 by combining bacterial artificial chromosome (BAC) sequence analysis, high-information-content fingerprinting, genetic analysis, and BAC-fluorescent in situ hybridization (FISH) mapping data. The chromosome positions of 81 …
nl
(code pays fourni par la source)