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Profil bibliographique

Mustafa Kocak

Informations fournies par OpenAlex. Research Africa ne déduit ni nationalité, ni poste, ni coordonnées personnelles.

50Publications signalées
6925Citations signalées
2Affiliations récentes

Les institutions déclarées

Les domaines associés

Cell Image Analysis TechniquesComputational Drug Discovery MethodsProtein Degradation and InhibitorsAdvanced biosensing and bioanalysis techniquesPeptidase Inhibition and Analysis

Les publications récentes

2026 article OpenAlex

Sialylated CD43 forms a glyco-immune barrier that restrains antileukemic immunity

Jooho Chung, Mounica Vallurupalli, Sarah Noel, Gail Schor et autres

Macrophages exert antitumorigenic activity through phagocytosis, but phagocytosis-enhancing therapeutics have not improved acute myeloid leukemia (AML) outcomes. To identify phagocytosis regulators, we performed CRISPR knockout screens in human AML cells cocultured with human macrophages. We found that the "don't eat me" signal …

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12 citations Science
2026 conference-abstract OpenAlex

Abstract 5843: Beyond viability: Post treatment single cell and spatial transcriptomic profiling in mixtures of PRISM barcoded cancer cell lines

Laura Doherty, Ashish Bino George, Mustafa Kocak, Paul E. Lund et autres

Abstract PRISM is a highly multiplexed, genomic barcode-based cell line viability technology of nearly 1000 solid tumor and hematopoietic cell lines. The unique cell line barcodes enable the cell lines to be multiplexed into pools of dozens to hundreds of different cell …

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0 citations Cancer Research
2026 conference-abstract OpenAlex

Abstract 2930: Unraveling determinants of drug response: PRISM viability profiling of hundreds of oncology therapeutics reveals mediators of selectivity and mechanism.

Matthew G. Rees, Mustafa Kocak, Matthew J. Emmett, Colleen T. Harrington et autres

Abstract Incomplete understanding of drug mechanism, selectivity, and polypharmacology can contribute to failed clinical trials. Drug candidates are generally characterized with limited pre-clinical tools and a narrow indication focus based on expected target biology. Using approaches such as large-scale PRISM profiling of …

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0 citations Cancer Research
2026 conference-abstract OpenAlex

Abstract 4024: Dysregulated AKT signaling reprograms osteosarcoma to drive selective reliance on EP300

Ian Michael Delahunty, Stephanie Nance, Yang Zhang, François Lamoureux et autres

Abstract Cancer cells are dependent on the control of transcription for maintenance of the malignant cell state. EP300 and CBP are paralogous, commonly expressed, master epigenetic enzymes, whose activity controls normal and malignant transcription. Here, using a cancer-wide integrative chemical-genetic analysis, we …

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0 citations Cancer Research
2026 conference-abstract OpenAlex

Abstract 4502: Expanding the PRISM platform: Addition of new hematologic models and a 10-day assay improve drug sensitivity mapping for epigenetic targets.

Colleen T. Harrington, Antonella Masciotti, Ursula Widocki, Laura M. Doherty et autres

Abstract Despite major advances in targeted therapies, cancer remains a leading cause of death among pediatric, adolescent, and adult populations, emphasizing the need for continued therapeutic innovation. The PRISM assay enables large-scale evaluation of oncology agents by barcoding and pooling over 900 …

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0 citations Cancer Research
Accès ouvert 2025 preprint OpenAlex

Discovery of chromatin-based determinants of azacytidine and decitabine anti-cancer activity

Rishi V. Puram, Qiangzong Yin, YuhJong Liu, Justine C. Rutter et autres

The DNA-incorporating nucleoside analogs azacytidine (AZA) and decitabine (DEC) have clinical efficacy in blood cancers, yet the precise mechanism by which these agents kill cancer cells has remained unresolved -- specifically, whether their anti-tumor activity arises from conventional DNA damage or DNA …

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0 citations bioRxiv (Cold Spring Harbor Laboratory)
Accès ouvert 2025 preprint OpenAlex

Sialylated CD43 is a glyco-immune checkpoint for macrophage phagocytosis

Jooho Chung, Mounica Vallurupalli, Gail Schor, YuhJong Liu et autres

Macrophages in the tumor microenvironment exert potent anti-tumorigenic activity through phagocytosis. Yet therapeutics that enhance macrophage phagocytosis have not improved outcomes in clinical trials for patients with acute myeloid leukemia (AML) or myelodysplastic syndrome (MDS). To systematically identify regulators of phagocytosis, we …

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2 citations bioRxiv (Cold Spring Harbor Laboratory)
2025 conference-abstract OpenAlex

Abstract 4228: PRISM cancer cell viability profiling enables insights into clinical candidate target selectivity: A case study revealing the most selective PRMT5 inhibitors for cancers with MTAP loss

Laura Doherty, Colleen M. Harrington, Mustafa Kocak, Anthony Fazio et autres

Abstract PRISM is a highly multiplexed, genomic barcode-based cell line viability technology of nearly 1000 solid tumor and hematopoietic cell lines, which enables profiling of cellular responses to small molecules or biologics to discover biomarkers of sensitivity and resistance and generate mechanistic …

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0 citations Cancer Research
2025 conference-abstract OpenAlex

Abstract 6763: A cellular platform for systematic comparison of RAS inhibitors using PRISM multiplexed screening

Matthew G. Rees, Mustafa Kocak, Matthew J. Emmett, Colleen T. Harrington et autres

Abstract The discovery and development of direct inhibitors of KRAS is transforming therapeutic options across diverse cancer types. Here, we use the PRISM collection of nearly 900 cancer cell lines, including more than 150 KRAS-mutant cell lines, to characterize 19 KRAS-targeting inhibitors …

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0 citations Cancer Research
2025 conference-abstract OpenAlex

Abstract 5459: Accelerating the development of biologics: PRISM high throughput screening enables rapid preclinical characterization of antibodies, ADCs and payloads

Jillian N. Eskra, Alvin Kalathungal, Aydin Golabi, Antonella Masciotti et autres

Biologic agents, such as monoclonal antibodies and antibody-drug conjugates (ADCs), have emerged as a highly promising class of the cancer therapeutics due to their ability to target specific tumor antigens with high specificity, be engineered for selective delivery of cytotoxic payloads, and …

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0 citations Cancer Research
Accès ouvert 2024 article OpenAlex

Group 3 medulloblastoma transcriptional networks collapse under domain specific EP300/CBP inhibition

Noha A.M. Shendy, Melissa J. Bikowitz, Logan H. Sigua, Yang Zhang et autres

Chemical discovery efforts commonly target individual protein domains. Many proteins, including the EP300/CBP histone acetyltransferases (HATs), contain several targetable domains. EP300/CBP are critical gene-regulatory targets in cancer, with existing high potency inhibitors of either the catalytic HAT domain or protein-binding bromodomain (BRD). …

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16 citations Nature Communications
2024 conference-abstract OpenAlex

Abstract 4560: Assessing cancer drug combination efficacy across 900+ PRISM cell lines in a multiplexed screening assay

Ashish Bino George, Shiker Nair, Mustafa Kocak, Ellen Nguyen et autres

Abstract Combination therapies are crucial in cancer care, yet identifying which combination will benefit a specific patient is challenging. The vast array of clinical, investigational, and tool anticancer agents and diverse cancer contexts makes investigating many drug combinations over a large number …

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0 citations Cancer Research

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