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Profil bibliographique

Mark Duerkop

Informations fournies par OpenAlex. Research Africa ne déduit ni nationalité, ni poste, ni coordonnées personnelles.

26Publications signalées
658Citations signalées
0Affiliations récentes

Les domaines associés

Viral Infectious Diseases and Gene Expression in InsectsProtein purification and stabilitySARS-CoV-2 and COVID-19 ResearchSARS-CoV-2 detection and testingAdvanced Control Systems Optimization

Les publications récentes

Accès ouvert 2026 article OpenAlex

Enabling continuous plasmid DNA production: Model-based optimization of inline alkaline lysis

Ramón Korn, Florian Weiß, Markus C. Berg, Benedikt Haslinger et autres

Plasmid DNA is a critical raw material for genetic medicines, including viral vectors and mRNA vaccines, yet its primary recovery remains a significant downstream bottleneck. Overcoming these current limitations is essential to meet the rapidly growing demand for genetic medicines while increasing …

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0 citations Biochemical Engineering Journal
Accès ouvert 2026 preprint OpenAlex

CFD-Informed Hybrid Modeling Unlocks Scalable, Tunable Amino Acid Production in Methanothermobacter marburgensis

Benedikt Haslinger, Barbara Reischl, Franziska Steger, Maximilian Krippl et autres

Abstract Methanogenic archaea, such as Methanothermobacter marburgensis, represent a powerful biological platform for carbon capture and valorization, directly converting carbon dioxide (CO2) and molecular hydrogen (H2) into proteinogenic amino acids (AAs). In this study, we present a controlled and scalable strategy for …

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0 citations bioRxiv (Cold Spring Harbor Laboratory)
Accès ouvert 2025 article OpenAlex

Digital Model‐Driven Cell & Gene Therapy Process Development

Evan Claes, Tommy Heck, Roger Dalmau‐Diaz, Mark Duerkop et autres

The intensification of cell & gene therapy manufacturing processes is crucial for their industrial translation and for addressing large patient populations at a sustainable price, as corroborated by recent communications by the FDA. Achieving this requires innovative process development strategies to reduce …

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0 citations Biotechnology and Bioengineering
Accès ouvert 2023 article OpenAlex

Boost dynamic protocols for producing mammalian biopharmaceuticals with intensified DoE—a practical guide to analyses with OLS and hybrid modeling

Verena Nold, Lisa Junghans, Benjamin Bayer, Lorenzo Bisgen et autres

Introduction: For the implementation of robust bioprocesses, understanding of temporal cell behavior with respect to relevant inputs is crucial. Intensified Design of Experiments (iDoE) is an efficient tool to assess the joint influence of input parameters by including intra-experimental changes. Methods: We …

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11 citations Frontiers in Chemical Engineering
Accès ouvert 2022 article OpenAlex

Comparison of mechanistic and hybrid modeling approaches for characterization of a CHO cultivation process: Requirements, pitfalls and solution paths

Benjamin Bayer, Mark Duerkop, Ralf Pörtner, Johannes Möller

Despite the advantages of mathematical bioprocess modeling, successful model implementation already starts with experimental planning and accordingly can fail at this early stage. For this study, two different modeling approaches (mechanistic and hybrid) based on a four-dimensional antibody-producing CHO fed-batch process are …

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42 citations Biotechnology Journal
Accès ouvert 2022 article OpenAlex

Increasing test specificity without impairing sensitivity: lessons learned from SARS-CoV-2 serology

Thomas Perkmann, Thomas Köller, Nicole Perkmann‐Nagele, Mária Ozsvár-Kozma et autres

BACKGROUND: Serological tests are widely used in various medical disciplines for diagnostic and monitoring purposes. Unfortunately, the sensitivity and specificity of test systems are often poor, leaving room for false-positive and false-negative results. However, conventional methods were used to increase specificity and …

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6 citations Journal of Clinical Pathology
Accès ouvert 2022 article OpenAlex

SARS-CoV-2 RBD-specific and NP-specific antibody response of healthcare workers in the westernmost Austrian state Vorarlberg: a prospective cohort study

Michele Atzl, Axel Muendlein, Thomas L. Winder, Peter Fraunberger et autres

Objectives Austria, and particularly its westernmost federal state Vorarlberg, developed an extremely high incidence rate during the COVID-19 pandemic. Healthcare workers (HCWs) worldwide are known to have an increased risk of contracting the disease within the working environment and, therefore, the seroprevalence …

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3 citations BMJ Open
Accès ouvert 2021 article OpenAlex

Model Transferability and Reduced Experimental Burden in Cell Culture Process Development Facilitated by Hybrid Modeling and Intensified Design of Experiments

Benjamin Bayer, Mark Duerkop, Gerald Striedner, Bernhard Sissolak

Reliable process development is accompanied by intense experimental effort. The utilization of an intensified design of experiments (iDoE) (intra-experimental critical process parameter (CPP) shifts combined) with hybrid modeling potentially reduces process development burden. The iDoE can provide more process response information in …

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38 citations Frontiers in Bioengineering and Biotechnology
Accès ouvert 2021 article OpenAlex

Proton-transfer-reaction mass spectrometry (PTR-MS) for online monitoring of glucose depletion and cell concentrations in HEK 293 gene therapy processes

Benjamin Bayer, Andreas Maccani, Johanna A. Jähn, Mark Duerkop et autres

OBJECTIVES: The applicability of proton-transfer-reaction mass spectrometry (PTR-MS) as a versatile online monitoring tool to increase consistency and robustness for recombinant adeno-associated virus (rAAV) producing HEK 293 bioprocesses was evaluated. We present a structured workflow to extract process relevant information from PTR-MS …

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6 citations Biotechnology Letters
Accès ouvert 2021 article OpenAlex

Hybrid modeling reduces experimental effort to predict performance of serial and parallel single-pass tangential flow filtration

Maximilian Krippl, Tobias Kargl, Mark Duerkop, Astrid Dürauer

Single-pass tangential flow filtration (SPTFF) is a promising and increasingly important tool for continuous biomanufacturing and intensified bioprocessing. SPTFF operates at high product concentrations often limiting the number of process development experiments and therefore process understanding. We developed hybrid model structures to …

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26 citations Separation and Purification Technology
Accès ouvert 2021 article OpenAlex

Digital Twin Application for Model-Based DoE to Rapidly Identify Ideal Process Conditions for Space-Time Yield Optimization

Benjamin Bayer, Roger Dalmau Diaz, Michael Melcher, Gerald Striedner et autres

The fast exploration of a design space and identification of the best process conditions facilitating the highest space-time yield are of great interest for manufacturers. To obtain this information, depending on the design space, a large number of practical experiments must be …

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54 citations Processes

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