OMA Browser Datasets

Le résumé fourni par la source

OMA is a method and database for the inference of orthologs among complete genomes. We provide browsable orthology predictions, APIs, flat file downloads and a standalone version of the inference algorithm on our main website: https://omabrowser.org This zenodo record contains flat files of archive and current releases of the OMA Browser. The most important files are: Dataset Filename Format Hierarchical Orthologous Groups (HOGs) oma-hogs.orthoXML.gz OrthoXML format OMA Groups, aka Strict Orthologous Groups (SOG) oma-groups.txt.gz TXT; flat groups oma-groups.orthoXML.gz OrthoXML format Pairwise Orthologs (Pairs of Proteins) oma-pairs.txt.gz TSV file Species / Genomes used in dataset oma-species.txt TSV file Protein sequences of all species / genome oma-seqs.fa.gz Fasta file Gene Ontology Annotations of all proteins oma-go.txt.gz TSV file Cross-references to various databases (Ensembl, RefSeq, UniProtKB, ...) oma- .txt.gz TSV file

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