genomic-medicine-sweden/nallo: 0.10.0

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Highligts Added #807 - Added new workflow for generating input data (coverage and B-allele frequencies, BAF) to Gens. Changed #847 - Changed local whatshap/stats module to the nf-core module #853 - Changed local whatshap/phase module to the nf-core module #857 - Set SOMALIER_PED_FAMILY publishDir mode to match the rest of the pipeline processes #866 - Updated test data and test snapshots Removed #858 - Removed validation for empty samplesheet, because it obfuscates other errors Fixed #871 Fixed MethBat region validation running even when methylation calling is skipped Parameters | Old parameter | New parameter | | ------------- | --------------------------- | | | --skip_prepare_gens_input | | | --gens_baf_positions | | | --gens_panel_of_normals | | | --gens_coverage_bins | [!NOTE] Parameter has been updated if both old and new parameter information is present. Parameter has been added if just the new parameter information is present. Parameter has been removed if new parameter information isn't present. Module updates | Tool | Old version | New version | | ----------------------- | ----------- | ----------- | | gatk4/denoisereadcounts | | 4.6.2.0 | | gens/preparecovandbaf | | 1.4.0 | | cat/cat | | 2.8 | [!NOTE] Version has been updated if both old and new version information is present. Version has been added if just the new version information is present. Version has been removed if new version information isn't present. New Contributors @Jakob37 made their first contribution in https://github.com/genomic-medicine-sweden/nallo/pull/866 Full Changelog: https://github.com/genomic-medicine-sweden/nallo/compare/0.9.2...0.10.0

Ce résumé expose les affirmations des auteurs. BNTIC ne l’interprète pas comme une validation indépendante des résultats.