Accès ouvert déclaré
2012
article
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham, Ewan Birney, Javier Herrero, Steven P. Wilder, Damian Keefe, Kathryn Beal, Paul Flicek, Nathan Johnson, Daniel Sobral, Anshul Kundaje, Serafim Batzoglou, Nadine Hussami, Sofia Kyriazopoulou-Panagiotopoulou, Max W. Libbrecht, Marc A. Schaub, Shelley F. Aldred, Patrick Collins, Nathan D. Trinklein, Carrie A. Davis, Felix Schlesinger, T Gingeras, Alex Dobin, Wei Lin, Chenghai Xue, Chris Zaleski, Michael T. Baer, Philippe Batut, Kimberly Bell, Sudipto Chakrabortty, Jörg Drenkow, Megan Fastuca, Kata Fejes-Toth, Assaf Gordon, Sonali Jha, Jonathan Preall, Kimberly Presaud, Lei-Hoon See, Huaien Wang, Gregory J. Hannon, Francis Doyle, Scott A. Tenenbaum, Charles B. Epstein, Noam Shoresh, B Bernstein, Tarjei S. Mikkelsen, Alon Goren, Oren Ram, Xiaolan Zhang, Li Wang, Robbyn Issner, Michael J. Coyne, Timothy Durham, Manching Ku, Thanh Truong, Seth Frietze, Peggy Farnham, Heather Witt, Jennifer Harrow, Timothy J. Hubbard, Felix Kokocinski, Bronwen Aken, Daniel Barrell, Gemma Barson, Andrew Berry, Alexandra Bignell, Veronika Boychenko, Claire Davidson, Gloria Despacio-Reyes, Adam Frankish, James Gilbert, José M. González, Ed Griffiths, Toby Hunt, Mike Kay, Jane Loveland, Deepa Manthravadi, Jonathan Mudge, Gaurab Mukherjee, Gary Saunders, Stephen Searle, Catherine Snow, Charlie Steward, Electra Tapanari, Laurens Wilming, Amonida Zadissa, Rajinder Kaul, Jainab Khatun, Morgan C. Giddings, John Wrobel, Brian A. Risk, Bryan R. Lajoie, Amartya Sanyal, Job Dekker, Gaurav Jain, Stephen G. Landt, M Snyder, Nick Addleman, Keith Bettinger, Alan P. Boyle, Philip Cayting, Yong Cheng, Catharine Eastman, G. Euskirchen, Fabian Grubert, Manoj Hariharan, Konrad J. Karczewski, Maya Kasowski, Phil Lacroute, Hugo Lam, Zhengqing Ouyang, Dorrelyn Patacsil, Lucia Ramirez, Minyi Shi, Teri Slifer, Linfeng Wu, Xinqiong Yang, Bum-Kyu Lee, Anna Battenhouse, Akshay Bhinge, Zheng Liu, Ryan M. McDaniell, 倪芸芸, Vishwanath R. Iyer, Florencia Pauli, Timothy E. Reddy, Chris Gunter, Richard M. Myers, Jason Gertz, E. Partridge, Katherine E. Varley, Anita Bansal, Preti Jain, Kevin M. Bowling, Marie K. Cross, Michael Muratet, Kimberly M. Newberry, Amy S. Nesmith, Barbara Pusey, Stephanie Parker, Nicholas S. Davis, Sarah K. Meadows, Tracy Eggleston, J. Scott Newberry, Shawn Levy, Devin M. Absher, Kate R. Rosenbloom, W. James Kent, Cricket A. Sloan, Katrina Learned, Venkat S. Malladi, Matthew C. Wong, Galt P Barber, Melissa Cline, Timothy R. Dreszer, Steven G. Heitner, Donna Karolchik, Vanessa M. Kirkup, Laurence Meyer, Jeffrey C. Long, Morgan Maddren, Brian J. Raney, Mark Diekhans, Rachel Harte, Peter Sabo, Michael M. Hoffman, Robert E. Thurman, Daniel Bates, Theresa K. Canfield, Morgan J. Diegel, Douglas Dunn, Erica Gist, Eric Haugen, Richard Humbert, Audra Johnson, Tattyana V. Kutyavin, Kristen Lee, Matthew T. Maurano, Shane Neph, Fiedencio V. Neri, Hongzhu Qu, Alex Reynolds, Vaughn Roach, Eric Rynes, Richard Sandstrom, Anthony O. Shafer, Andrew B. Stergachis, Sean Thomas, Benjamin Vernot, Jeff Vierstra, Shinny Vong, Hao Wang, Molly A. Weaver, Joshua M. Akey, Michael J. MacCoss, William Stafford Noble, Orion J. Buske, Avinash D. Sahu, Alexias Safi, Lingyun Song, Gregory E. Crawford, Nathan C. Sheffield, Darin London, Tianyuan Wang, Deborah Winter, Jeremy M. Simon, Jason D. Lieb, Linda L. Grasfeder, Paul G. Giresi, Kimberly A. Showers, Christopher Shestak, Matthew R. Schaner, Seul Ki Kim, Zhuzhu Z. Zhang, Joanna O Mieczkowska, Min Jae Kim, Sheera Adar, Robert C. Altshuler, Jason Ernst, Manolis Kellis, Pouya Kheradpour, Lucas D. Ward, Matthew L. Eaton, David A. Hendrix, Irwin Jungreis, Michael F. Lin, Stefan Washietl, James B. Brown, Qunhua Li, Peter J. Bickel, Balázs Bánfai, Nathan P. Boley, Haiyan Huang, Jingyi Jessica Li, Chao Cheng, Mark Gerstein, Joel Rozowsky, Kevin Y. Yip, Alexej Abyzov, E Khurana, Jing Leng, Baikang Pei, Cristina Sisu, Roger P. Alexander, Raymond K. Auerbach, Suganthi Balasubramanian, Nitin Bhardwaj, Lukas Habegger, Arif Harmanci, Renqiang Min, Xinmeng J. Mu, Koon-Kiu Yan, Lucas Lochovsky, Sarah Djebali, Angelika Merkel, Roderic Guigó, Andrea Tanzer, Julien Lagarde, Maik Röder, Tyler Alioto, João Curado, Thomas Derrien, Pedro Ferreira, David Gonzalez, Rory Johnson, Colin Kingswood, Paolo Ribeca, Michael Sammeth, Jørgen Skancke, Hagen Tilgner, Giovanni Bussotti, Marco Mariotti, Cédric Notredame, Xianjun Dong, Melissa Greven, Xinying Lin, Jie Wang, Troy W. Whitfield, Jiali Zhuang, Zhiping Weng, Terrence S. Furey, Zhancheng Zhang, Belinda Giardine, R Hardison, Robert S. Harris, Weisheng Wu, Webb Miller, Sowmya Iyer, Timo Lassmann, Rehab F. Abdelhamid, Ana Maria Suzuki, Hazuki Takahashi, Yoshihide Hayashizaki, Piero Carninci, Georgi K. Marinov, Barbara Wold, Brian A. Williams, Igor Antoshechkin, Brandon King, Lorain Schaeffer, Diane Trout, Jost Vielmetter, Clarke Gasper, Shirley Pepke, Henry Amrhein, Michael Anaya, Kenneth McCue, Katherine Fisher-Aylor, Gilberto DeSalvo, Sreeram Balasubramanian, Ali Mortazavi, Eddie Park, Stephen C.J. Parker, Elliott H. Margulies, Hualin S. Xi, Shawn Gillespie, Eric D. Green, Michael J. Pazin, Rebecca F. Lowdon, Laura A. L. Dillon, Leslie B. Adams, Caroline J. Kelly, Julia Zhang, Judith R. Wexler, Peter J. Good, Elise A. Feingold, Laura Elnitski, Hanna M. Petrykowska, J Stamatoyannopoulos, Kevin P. White, Subhradip Karmakar, Raj R. Bhanvadia, Alina Choudhury, Marc Domanus, Lijia Ma, Jennifer Moran, Alec Victorsen, Yanbao Yu, Harsha P. Gunawardena, Heather Kuiper, Christopher W. Maier, Ling Xie, Xian Chen, Ian Bell, Erica Dumais, Jackie Dumais, Radha Duttagupta, Sylvain Foissac, Hui Gao, Philipp Kapranov, Jacqueline Chrast, Cédric Howald, Nathalie Walters, Alexandre Reymond, Melissa J. Fullwood, Oscar J. Luo, Xiaoan Ruan, Kuljeet Singh Sandhu, Atif Shahab, Yijun Ruan, Meizhen Zheng, Ping Wang, Guoliang Li, Daniel Robyr, Stylianos E. Antonarakis, Piotr A. Mieczkowski, Naim U. Rashid, Wing H. Wong, Matthew J. Blow, Axel Visel, Len A. Pennachio, Iakes Ezkurdia, José Manuel Rodrı́guez, Michael L. Tress, Alfonso Valencia, Zhi Lu, Andrea Sboner, Marijke J. van Baren, Michael Brent, Zhengdong Zhang, David Haussler, Alina R. Cao, Henriette O’Geen, Xiaoqin Xu, Alexandra Charos, Hannah Monahan, Debasish Raha, Brian Reed, Joseph D. Fleming, Nathan Lamarre-Vincent, Marianne Lindahl-Allen, Benoît Miotto, Zarmik Moqtaderi, Kevin Struhl, Sushma Iyengar, Victor X. Jin, Jin Lian, Sherman M. Weissman, Luiz O. Penalva, Thomas Auer, Lázaro Centanin, Michael Eichenlaub, Franziska Gruhl, Stephan Heermann, Burkhard Hoeckendorf, Daigo Inoue, Tanja Kellner, Stephan Kirchmaier, Claudia Mueller, Robert Reinhardt, Lea Schertel, Stephanie Schneider, R. Sinn, Beate Wittbrodt, Jochen Wittbrodt, Gayathri Balasundaram, Rachel Byron, Miaohua Zhang, Michael Bender, Mark Groudine, Abigail K. Ebersol, T Frum, R. Scott Hansen, Lisa Boatman, Ericka M. Johnson, Dimitra Lotakis, Éric Nguyen, Minerva E. Sanchez, Yongqi Yan, Patrick Navas, George Stamatoyannopoulos, Kavita Garg, Michael O. Dorschner, Alvis Brāzma, Margus Lukk, Nicholas M. Luscombe, Juan M. Vaquerizas, Arend Sidow, Jeffrey A. Bilmes, Peter V. Kharchenko, Peter J. Park, Dannon Baker, James Taylor
19690Citations signalées, ce qui n’est pas une note de qualité
60Institutions déclarées
10Pays d’affiliation déclarés
Rattachement africain : gb, fr, us, ch, es, jp, sg, cn, sk, de.
Niveau de preuve : code pays fourni par la source.
Le résumé fourni par la source
The human genome encodes the blueprint of life, but the function of the vast majority of its nearly three billion bases is unknown. The Encyclopedia of DNA Elements (ENCODE) project has systematically mapped regions of transcription, transcription factor association, chromatin structure and histone modification. These data enabled us to assign biochemical functions for 80% of the genome, in particular outside of the well-studied protein-coding regions. Many discovered candidate regulatory elements are physically associated with one another and with expressed genes, providing new insights into the mechanisms of gene regulation. The newly identified elements also show a statistical correspondence to sequence variants linked to human disease, and can thereby guide interpretation of this variation. Overall, the project provides new insights into the organization and regulation of our genes and genome, and is an expansive resource of functional annotations for biomedical research. This overview of the ENCODE project outlines the data accumulated so far, revealing that 80% of the human genome now has at least one biochemical function assigned to it; the newly identified functional elements should aid the interpretation of results of genome-wide association studies, as many correspond to sites of association with human disease. The Encyclopedia of DNA Elements (ENCODE) project has systematically mapped regions of transcription, transcription-factor association, chromatin structure and histone modification. In this overview, the Consortium guides the readers through the project itself, the data and their integrated analyses. Eighty per cent of the human genome now has at least one biochemical function assigned to it. In addition to expanding our understanding of how gene expression is regulated on a genome-wide scale, the newly identified functional elements should help researchers to interpret the results of genome-wide associated studies because many correspond to sites associated with human disease.
Ce résumé expose les affirmations des auteurs. BNTIC ne l’interprète pas comme une validation indépendante des résultats.
Le contrôle bibliographique ouvert
DOI retrouvé dans Crossref DOI retrouvé ; titre concordant.
- Titre Crossref
- An integrated encyclopedia of DNA elements in the human genome
- Date Crossref
- 01/09/2012
- Éditeur
- Springer Science and Business Media LLC
- Type
- journal-article
Ce recoupement confirme des métadonnées liées au DOI. Il ne confirme ni la méthode ni les conclusions de l’étude, et il ne compte pas comme une seconde source scientifique indépendante.
Les institutions déclarées
Une affiliation ne permet pas de déduire la nationalité d’un auteur.
Les sujets associés
Genomics and Chromatin DynamicsRNA and protein synthesis mechanismsRNA modifications and cancer