Hardware Software Synergy in Proteomics: Systematic Evaluation Across Mass Spectrometry Platforms, Search Engines, and Rescoring Methods
Sander Heyndrickx, Robbin Bouwmeester, Arthur Declercq, Robbe Devreese et autres
0 citationsChemRxiv
Robbin Bouwmeester
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11Publications signalées
5Citations signalées
6Affiliations récentes
Institutions déclarées
Domaines associés
Advanced Proteomics Techniques and Applicationsvaccines and immunoinformatics approachesMass Spectrometry Techniques and ApplicationsMachine Learning in BioinformaticsSingle-cell and spatial transcriptomics
Publications récentes
Instrument-Software Synergy in Proteomics: Systematic Evaluation Across Mass Spectrometry Platforms, Search Engines, and Rescoring Methods
Sander Heyndrickx, Ralf Gabriels, Robbin Bouwmeester, Robbe Devreese et autres
0 citationsZenodo (CERN European Organization for Nuclear Research)
Instrument-Software Synergy in Proteomics: Systematic Evaluation Across Mass Spectrometry Platforms, Search Engines, and Rescoring Methods
Sander Heyndrickx, Ralf Gabriels, Robbin Bouwmeester, Robbe Devreese et autres
0 citationsZenodo (CERN European Organization for Nuclear Research)
Transfer learning in DeepLC improves LC retention time prediction across substantially different modifications and setups
Robbin Bouwmeester, Alireza Nameni, Arthur Declercq, Robbe Devreese et autres
0 citationsNature Communications
LFQ Benchmark Dataset - Generation Beta: Assessing Modern Proteomics Instruments and Acquisition Workflows with High-Throughput LC Gradients
Bart Van Puyvelde, Robbe Devreese, Cristina Chiva, Eduard Sabidó et autres
4 citationsbioRxiv (Cold Spring Harbor Laboratory)
The Escherichia coli PeptideAtlas Build: Characterizing the Observed Escherichia coli Pan-Proteome and Its Post-Translational Modifications
Caroline Jachmann, Zhi Sun, Kevin Velghe, Florence Arsène-Ploetze et autres
0 citationsJournal of Proteome Research
quantms-rescoring enables deep proteome coverage across protein quantification, immunopeptidomics, and post-translational modifications experiments
Chengxin Dai, Ralf Gabriels, Robbin Bouwmeester, Asier Larrea‐Sebal et autres
0 citationsbioRxiv (Cold Spring Harbor Laboratory)
Koina: Democratizing machine learning for proteomics research
Ludwig Lautenbacher, Kevin Yang, Tobias Kockmann, Christian Panse et autres
0 citationsZurich Open Repository and Archive (University of Zurich)
ClassiCOL: LC-MS/MS analysis for ancient species Classification via Collagen peptide ambiguation
Ian Engels, Alexandra Burnett, Prudence Robert, Camille Pironneau et autres
1 citationbioRxiv (Cold Spring Harbor Laboratory)
Bioinformatics Pipeline for Processing Single-Cell Data
Arthur Declercq, Nina Demeulemeester, Ralf Gabriels, Robbin Bouwmeester et autres
0 citationsMethods in molecular biology
Potential of Proteomics in Forensic Phenotyping: A Focus on Biological Sex Determination
Shirin Alex, Ruben Almey, Rachel Siân Dennis, Olivier Tytgat et autres
0 citationsSSRN Electronic Journal
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