Accès ouvert
2026
preprint
OpenAlex
Ernesto Abila, Yi-Min Zheng, Zsuzsanna Bagó-Horváth, André F. Rendeiro
Aging reshapes the human body at the cellular level, yet how cell identity, morphology, and spatial organization remodel across organs and the adult lifespan remains poorly mapped, at a scale and lifespan coverage that molecular spatial assays cannot yet reach. Treating the …
at
(code pays fourni par la source)
Accès ouvert
2026
software
OpenAlex
Yi-Min Zheng, Zhihang Zheng, André F. Rendeiro, Edwin Cheung
What's Changed fix: NaN padding, warning stacklevels, and Zero* data sources by @Mr-Milk in https://github.com/Marsilea-viz/marsilea/pull/112 Full Changelog: https://github.com/Marsilea-viz/marsilea/compare/v0.8.0...v0.8.1
mo
(code pays fourni par la source)
Accès ouvert
2026
software
OpenAlex
Yi-Min Zheng, Zhihang Zheng, André F. Rendeiro, Edwin Cheung
What's Changed feat: plot directly from AnnData and MuData by @Mr-Milk in https://github.com/Marsilea-viz/marsilea/pull/108 fix: report data errors where the mistake was made by @Mr-Milk in https://github.com/Marsilea-viz/marsilea/pull/110 Full Changelog: https://github.com/Marsilea-viz/marsilea/compare/v0.7.0...v0.8.0
mo
(code pays fourni par la source)
Accès ouvert
2026
software
OpenAlex
Yi-Min Zheng, Zhihang Zheng, André F. Rendeiro, Edwin Cheung
A post release to make llms.txt generally accessible on RTD.
mo
(code pays fourni par la source)
Accès ouvert
2026
software
OpenAlex
Yi-Min Zheng, Zhihang Zheng, André F. Rendeiro, Edwin Cheung
What's Changed In this new release, marsilea supports using statsannotations to annotate seaborn plots. fix(docs): vendor remote gallery assets so RTD builds stop 429ing by @Mr-Milk in https://github.com/Marsilea-viz/marsilea/pull/98 ci: update Python matrix to 3.11-3.14 and refresh all pipeline versions by @Mr-Milk in …
mo
(code pays fourni par la source)
Accès ouvert
2026
software
OpenAlex
Yi-Min Zheng, Zhihang Zheng, André F. Rendeiro, Edwin Cheung
What's Changed ci: replace archived ruff-action, pin ruff version and rule set by @Mr-Milk in https://github.com/Marsilea-viz/marsilea/pull/92 Require legendkit>=0.4.1 by @Mr-Milk in https://github.com/Marsilea-viz/marsilea/pull/91 fix: repair Read the Docs build broken by legendkit 0.4.1 by @Mr-Milk in https://github.com/Marsilea-viz/marsilea/pull/94 fix: pin categorical axis of seaborn …
mo
(code pays fourni par la source)
Accès ouvert
2026
preprint
OpenAlex
Samir Moustafa, Yi-Min Zheng, André F. Rendeiro
Abstract Stain normalization reduces color variability in histopathology whole-slide images, but cohort-scale pipelines lack fused multi-image batch transforms for classical methods. We present StainX, a GPU-accelerated batch stain normalization framework built around a two-stage fit/transform interface. It implements histogram matching, Macenko, and …
at
(code pays fourni par la source)
Accès ouvert
2026
article
OpenAlex
Shi-Lin Lin, Yue Wang, Yi-Min Zheng, Ai‐Wu Ke et autres
Metabolic plasticity driven by mitochondrial oxidative phosphorylation (OXPHOS) is increasingly recognized as a key determinant of therapeutic tolerance in hepatocellular carcinoma (HCC), but the upstream regulators that preserve electron transport chain stability during treatment remain poorly defined. In this study, we identified …
cn, Éthiopie
(code pays fourni par la source)
Accès ouvert
2026
dataset
OpenAlex
Ernesto Abila, Iva Buljan, Yi-Min Zheng, André F. Rendeiro
GTEx histology dataset embeddings (slide-level) We provide embeddings of GTEx slides for 25 models: 18 pathology foundation models, 1 visual-language model text similarity, 5 ImageNet trained models, and 1 fine tuned model. In addition, for some models, embeddings are provided at various …
at
(code pays fourni par la source)
Accès ouvert
2026
dataset
OpenAlex
Ernesto Abila, Iva Buljan, Yi-Min Zheng, André F. Rendeiro
GTEx histology dataset embeddings (slide-level) We provide embeddings of GTEx slides for 25 models: 18 pathology foundation models, 1 visual-language model text similarity, 5 ImageNet trained models, and 1 fine tuned model. In addition, for some models, embeddings are provided at various …
at
(code pays fourni par la source)
Accès ouvert
2026
software
OpenAlex
Yi-Min Zheng, Zhihang Zheng, André F. Rendeiro, Edwin Cheung
What's Changed feat: add **props to add_intersection() in UpSet by @Mr-Milk in https://github.com/Marsilea-viz/marsilea/pull/89 Full Changelog: https://github.com/Marsilea-viz/marsilea/compare/v0.6.1...v0.6.2
mo
(code pays fourni par la source)
Accès ouvert
2026
software
OpenAlex
Ernesto Abila, Iva Buljan, Yi-Min Zheng, Lisa Kleißl et autres
tissue-clocks v1.0.0 Source code release accompanying the Nature Medicine manuscript: Histological aging signatures enable inference of tissue-specific disease associations from blood Contents Full analysis pipeline for GTEx histopathology aging clocks Revision analyses: foundation models, external cohort validation, ICC reproducibility, Bland-Altman calibration, GNN …
at, de, be, au
(code pays fourni par la source)