Activity is in the Activations: Inference-Time Steering of Peptide Models for Antimicrobial Design
Grzegorz Siudak, Paulina Szymczak, Ewa Szczurek, Kamil Deja
0 citationsLecture notes in computer science
Paulina Szymczak
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22Publications signalées
445Citations signalées
4Affiliations récentes
Institutions déclarées
Domaines associés
vaccines and immunoinformatics approachesAntimicrobial Peptides and ActivitiesMachine Learning in BioinformaticsBiochemical and Structural CharacterizationSingle-cell and spatial transcriptomics
Publications récentes
Designing antimicrobials with programmable mechanism and safety
Paulina Szymczak, Marcelo D. T. Torres, Diogo Soares, Leon Hetzel et autres
0 citationsbioRxiv (Cold Spring Harbor Laboratory)
OmegAMP wet-lab characterization dataset
Paulina Szymczak, Marcelo D. T. Torres
0 citationsZenodo (CERN European Organization for Nuclear Research)
OmegAMP wet-lab characterization dataset
Paulina Szymczak, Marcelo D. T. Torres
0 citationsZenodo (CERN European Organization for Nuclear Research)
BATTLE-AMP: Benchmarking Antimicrobial Peptide Predictors
Paulina Szymczak, Adriana Bukala, Wojciech Zarzecki, Michal Šála et autres
0 citationsbioRxiv (Cold Spring Harbor Laboratory)
Pathogen-specific host responses define distinct pneumonia endotypes in the human lung
Nikolay S. Markov, Marcin Możejko, Vijeeth Guggilla, Małgorzata Łazęcka et autres
1 citationbioRxiv (Cold Spring Harbor Laboratory)
Integrated kidney and urine proteomics define encrypted antimicrobial peptides as effectors of host defence in human pyelonephritis
Olga Shevchuk, Lars Borgards, Hannah Voß, Stephanie Tautges et autres
0 citationsResearch Square
Integrated kidney and urine proteomics define encrypted antimicrobial peptides as effectors of host defence in human pyelonephritis
Lars Borgards, Hannah Luise Voss, Stephanie Tautges, Bente Siebels et autres
0 citationsbioRxiv (Cold Spring Harbor Laboratory)
FoldSAE: Learning to Steer Protein Folding Through Sparse Representations
Wojciech Zarzecki, Paulina Szymczak, Ewa Szczurek, Kamil Rafał Deja
0 citationsarXiv (Cornell University)
PepGlider: Property Regularized VAE for interpretable and controllable peptide design
Aleksandra Gwiazda, Paulina Szymczak, Ewa Szczurek
2 citationsbioRxiv (Cold Spring Harbor Laboratory)
PepCompass: Navigating peptide embedding spaces using Riemannian Geometry
Marcin Możejko, Adam Bielecki, Jurand Prądzyński, Marcin Traskowski et autres
0 citationsarXiv (Cornell University)
AI-Driven Antimicrobial Peptide Discovery: Mining and Generation
Paulina Szymczak, Wojciech Zarzecki, Jiejing Wang, Yiqian Duan et autres
90 citationsAccounts of Chemical Research
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