Xiangjian Gou

Decoding genetic basis of nitrogen-use efficiency in maize using AI-generated deep phenotypes

Haoyan Yang, Lingju Zeng, Xiangjian Gou, Yang Shao et autres

Improving nitrogen-use efficiency (NUE) is essential for sustainable agriculture, yet conventionally measured plant characteristics have limited value as NUE proxies. Here, we show that artificial intelligence (AI) can uncover previously unrecognized phenotypic variation associated with NUE, showing genetic variation that is largely …

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CQD: A Rapid and Accurate Tool for Identifying High-Confidence QTLs and Candidate Genes from GWAS Summary Statistics

Xiangjian Gou, Shaohong Fu, J. J. Li, Wanzhuo Gong et autres

Genome-wide association studies (GWAS) are a powerful approach for elucidating the genetic architecture of complex traits. The widespread application of GWAS across diverse crop species has generated vast amounts of GWAS summary statistics, creating a pressing need for effective tools to identify …

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Leveraging Phenotypic Plasticity in Seed Oil Content for Climate‐Adapted Breeding and Production

Lingju Zeng, Xu Han, Xiangjian Gou, He Pei et autres

Phenotypic plasticity is the property of an organism to change in response to different environments. Understanding and leveraging crop phenotypic plasticity is crucial for mitigating threats caused by climate change. Here, we assessed phenotypic plasticity in multi-environment trials over 4 years, using …

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A large-scale screening identifies receptor-like kinases with common features in kinase domains that are potentially related to disease resistance in planta

Yan Huang, Yuan Yuan, Rongqian Yang, Xiangjian Gou et autres

Introduction: The plant genome encodes a plethora of proteins with structural similarity to animal receptor protein kinases, collectively known as receptor-like protein kinases (RLKs), which predominantly localize to the plasma membrane where they activate their kinase domains to convey extracellular signals to …

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Stalks and roots are the main battlefield for the coevolution between maize and Fusarium verticillioides

Hao Xiong, Xiaobin Xing, Muyuan Liu, Zhaoyu Zhang et autres

Fusarium species are the dominant cause of maize ear rot, but they also inflict serious damage to the roots and stalks. Theoretically, the organ where the host interacts with the pathogen most frequently should exhibit the highest degree of symptom-genotype correlation. Because …

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Leveraging phenotypic plasticity in seed oil content for climate-adapted breeding and production

Lingju Zeng, Xu Han, Xiangjian Gou, He Pei et autres

Phenotypic plasticity is the ability of organisms to respond to environmental changes. Understanding and leveraging crop phenotypic plasticity is crucial for mitigating the threats caused by climate change. Here, we assessed phenotypic plasticity in multi-environment trials over 4 years, covering a wide …

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Evolutionary patterns of DNA base composition at polymorphic sites highlight the role of the environment in shaping barley and rice genomes

Xiangjian Gou, Yang Shao, Xiao Wang, Haoran Shi et autres

Insights into changes in genome base composition underlying crop domestication can be gained by using comparative genomics. With this approach, previous studies have reported that crop genomes during domestication accumulate more nucleotides adenine (A) and thymine (T) (termed as [AT]-increase) across polymorphic …

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Leveraging phenotypic plasticity in seed oil content for climate-adapted breeding and production

Tingting Guo, Lingju Zeng, Xu Han, Xiangjian Gou et autres

Phenotypic plasticity is the ability of organisms to respond to environmental changes. Understanding and leveraging crop phenotypic plasticity is crucial for mitigating the threats caused by climate change. Here, we assessed phenotypic plasticity in multi-environment trials over 4 years, covering a wide …

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Genome-wide identification and characterization of circRNAs in wheat tiller

Fangkun Wu, Zhiqiang Wang, Wanlin Zhou, Yan Liu et autres

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Teosinte confers specific alleles and yield potential to maize improvement

Qingjun Wang, Zhengqiao Liao, Chuntao Zhu, Xiangjian Gou et autres

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Genome-wide identification and characterization of circRNAs in wheat tiller

Fangkun Wu, Zhiqiang Wang, Wanlin Zhou, Yan Liu et autres

Abstract Circular RNAs (circRNAs) are a class of endogenous non-coding RNAs with covalently closed circular structures, which play an important role in transcriptional and post-transcriptional regulation. Tiller is an important agronomic trait that determines plant morphological architecture and affects spike number in …

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PPVED: A machine learning tool for predicting the effect of single amino acid substitution on protein function in plants

Xiangjian Gou, Xuanjun Feng, Haoran Shi, Tingting Guo et autres

Single amino acid substitution (SAAS) produces the most common variant of protein function change under physiological conditions. As the number of SAAS events in plants has increased exponentially, an effective prediction tool is required to help identify and distinguish functional SAASs from …

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