Single-cell spatial mapping reveals reproducible cell type organization and spatially-dependent gene expression in gastruloids
Catherine G. Triandafillou, Arjun Raj
0 citationsZenodo (CERN European Organization for Nuclear Research)
Arjun Raj
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298Publications signalées
27218Citations signalées
2Affiliations récentes
Institutions déclarées
Domaines associés
Single-cell and spatial transcriptomicsRNA Research and SplicingGene Regulatory Network AnalysisSkin Protection and AgingGenetics, Aging, and Longevity in Model Organisms
Publications récentes
Single-cell spatial mapping reveals reproducible cell type organization and spatially-dependent gene expression in gastruloids
Catherine G. Triandafillou, Arjun Raj
0 citationsZenodo (CERN European Organization for Nuclear Research)
Quantitative cytokine profiling of primary human macrophages reveals distinct single-cell modes of trained immunity
Aoife O'Farrell, Zijian Niu, Arjun Raj
0 citationsCell Systems
Human macrophages encode stimulus-specific information of prior exposures through trained immunity
Aoife O'Farrell, Zijian Niu, Jingxin Li, Laura C. Van Eyndhoven et autres
0 citationsCell Systems
Environmental Amino Acid Sensing Regulates the Rate of ASC Translation and NLRP3 Inflammasome Assembly
Mikel D. Haggadone, Brian P. Goldspiel, Aoife O'Farrell, Nora T Kiledjian et autres
1 citationbioRxiv (Cold Spring Harbor Laboratory)
SpaceBar enables single-cell-resolution clone tracing with imaging-based spatial transcriptomics
Grant Kinsler, Haiyin Li, Jessica Kaster, M. J. Dunne et autres
6 citationsNature Methods
Abstract A001: Pre-existing non-genetic cellular states determine susceptibility to oncogenic transformation
0 citationsCancer Research
NimbusImage: a cloud-computing platform for image analysis
Zijian Niu, Thibault Bruyère, David Manthey, Jingxin Li et autres
5 citationsNature Methods
Self-Organization Through Local Cell-Cell Communication Drives Intestinal Epithelial Zonation
Yael Heyman, Mordechai Erez, Philip Burnham, Mor Nitzan et autres
1 citationbioRxiv (Cold Spring Harbor Laboratory)
Single-cell susceptibility to viral infection is driven by variable cell states
Sam Reffsin, Jesse Miller, Kasirajan Ayyanathan, Margaret C. Dunagin et autres
10 citationsCell
Piscis: A loss estimator of the F1 score enables accurate spot detection in fluorescence microscopy images via deep learning
Zijian Niu, Aoife O'Farrell, Jingxin Li, Sam Reffsin et autres
4 citationsCell Systems
Dynamics of Ribosomal RNA Transcription and Abundance in Normal and Leukemic Hematopoiesis
Eleanor I. Sams, Victoria K. Feist, Erin M. Gray, Subin S. George et autres
0 citationsbioRxiv (Cold Spring Harbor Laboratory)
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