Accès ouvert
2025
article
OpenAlex
John P Fulton, Thomas Bertrand, Aditya Khanna, Jon A. Steingrimsson et autres
us
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2024
article
OpenAlex
Lila Bhattarai, Caroline Gummo, Thomas Bertrand, Emma Creegan et autres
Over the past 10 years, sexually transmitted infections (STIs) have seen a significant resurgence in the United States despite the availability of effective treatments and reliable prevention methods. Rhode Island has experienced a similar uptick in the incidence of syphilis, chlamydia and …
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Accès ouvert
2024
article
OpenAlex
Vlad Novitsky, Jon A. Steingrimsson, August Guang, Casey W. Dunn et autres
BACKGROUND: Characterizing HIV clustering rates and their trends over time can improve understanding a local epidemic and enhance its control. METHODS: Leveraging an academic-public health partnership in Rhode Island, we explored longitudinal dynamics of statewide clustering rates among key populations from 1991 …
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Accès ouvert
2024
article
OpenAlex
Rami Kantor, Jon A. Steingrimsson, John P Fulton, Vladimir Novitsky et autres
Background: Human immunodeficiency virus (HIV) remains a global challenge and novel measures for transmission disruption are needed. Contact tracing is limited by reluctance or inability of newly diagnosed individuals to name at-risk contacts. Molecular cluster analysis is mostly used for outbreak investigations, …
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Accès ouvert
2024
article
OpenAlex
Su Aung, Vlad Novitsky, Jon A. Steingrimsson, Fizza S. Gillani et autres
BACKGROUND: Human immunodeficiency virus type 1 (HIV-1) acquired drug resistance (ADR) compromises antiretroviral therapy (ART). METHODS: We aggregated all HIV-1 protease-reverse transcriptase-integrase sequences over 2004-2021 at the largest HIV center in Rhode Island and evaluated ADR extent, trends, and impact using Stanford …
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Accès ouvert
2024
article
OpenAlex
John P Fulton, Vladimir Novitsky, Fizza S. Gillani, August Guang et autres
BACKGROUND: The use of molecular HIV cluster analysis to supplement public health contact tracing has shown promise in addressing HIV outbreaks. However, the potential of HIV cluster analysis as an adjunct to daily, person-by-person HIV prevention efforts remains unknown. We documented lessons …
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2023
article
OpenAlex
Lila Bhattarai, Meghan MacAskill, Erin C. Fuse Brown, Thomas Bertrand et autres
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Accès ouvert
2023
article
OpenAlex
Aditya Khanna, Vladimir Novitsky, August Guang, Mark Howison et autres
Abstract Background HIV remains a significant public health concern. Both contact tracing (identifying and notifying partners of people diagnosed with HIV) and molecular epidemiology (phylogenetic inference and cluster detection), are used to disrupt transmission. Integration of both modalities may be synergistic, though …
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Accès ouvert
2023
article
OpenAlex
Mark Howison, Fizza S. Gillani, Vlad Novitsky, Jon A. Steingrimsson et autres
Molecular HIV cluster data can guide public health responses towards ending the HIV epidemic. Currently, real-time data integration, analysis, and interpretation are challenging, leading to a delayed public health response. We present a comprehensive methodology for addressing these challenges through data integration, …
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Accès ouvert
2023
preprint
OpenAlex
John P Fulton, Vladimir Novitsky, Fizza S. Gillani, August Guang et autres
us
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Accès ouvert
2022
article
OpenAlex
Vlad Novitsky, Jon A. Steingrimsson, Mark Howison, Casey W. Dunn et autres
OBJECTIVES: Molecular epidemiology is a powerful tool to characterize HIV epidemics and prioritize public health interventions. Typically, HIV clusters are assumed to have uniform patterns over time. We hypothesized that assessment of cluster evolution would reveal distinct cluster behavior, possibly improving molecular …
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2022
article
OpenAlex
Lila Bhattarai, Meghan MacAskill, Thomas Bertrand, Katharine Howe et autres
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