Accès ouvert
2020
article
OpenAlex
Andrew Lenards, Matthew R. Hanlon, Rion Dooley, Zhenyuan Lu et autres
The iPlant Collaborative (iPlant) is a United States National Science Foundation (NSF) funded project that aims to create an innovative, comprehensive, and foundational cyberinfrastructure in support of plant biology research (PSCIC, 2006). iPlant is developing cyberinfrastructure that uniquely enables scientists throughout the …
Accès ouvert
2018
article
OpenAlex
Adam P. Arkin, Robert W. Cottingham, Christopher S. Henry, Nomi L. Harris et autres
Over the past two decades, the scale and complexity of genomics technologies and data have advanced from sequencing genomes of a few organisms to generating metagenomes, genome variation, gene expression, metabolites, and phenotype data for thousands of organisms and their communities. A …
us
(code pays fourni par la source)
Accès ouvert
2016
preprint
OpenAlex
Adam P. Arkin, Rick L. Stevens, Robert W. Cottingham, Sergei Maslov et autres
Abstract The U.S. Department of Energy Systems Biology Knowledgebase (KBase) is an open-source software and data platform designed to meet the grand challenge of systems biology — predicting and designing biological function from the biomolecular (small scale) to the ecological (large scale). …
us
(code pays fourni par la source)
Accès ouvert
2014
article
OpenAlex
Samuel M. D. Seaver, Svetlana Gerdes, Océane Frelin, Claudia Lerma‐Ortiz et autres
The increasing number of sequenced plant genomes is placing new demands on the methods applied to analyze, annotate, and model these genomes. Today's annotation pipelines result in inconsistent gene assignments that complicate comparative analyses and prevent efficient construction of metabolic models. To …
us, in
(code pays fourni par la source)
Accès ouvert
2013
article
OpenAlex
Marcela K. Monaco, Joshua C. Stein, Sushma Naithani, Sharon Wei et autres
Gramene (http://www.gramene.org) is a curated online resource for comparative functional genomics in crops and model plant species, currently hosting 27 fully and 10 partially sequenced reference genomes in its build number 38. Its strength derives from the application of a phylogenetic framework …
gb, us
(code pays fourni par la source)
Accès ouvert
2013
article
OpenAlex
Ming‐Cheng Luo, Yong Gu, Frank M. You, Karin R. Deal et autres
The current limitations in genome sequencing technology require the construction of physical maps for high-quality draft sequences of large plant genomes, such as that of Aegilops tauschii, the wheat D-genome progenitor. To construct a physical map of the Ae. tauschii genome, we …
us, cn, de, gb, cz
(code pays fourni par la source)
Accès ouvert
2012
article
OpenAlex
Hideki Hirakawa, Erika Asamizu, K Shirasawa, Sachiko Isobe et autres
This paper reports the genome sequence of domesticated tomato, a major crop plant, and a draft sequence for its closest wild relative; comparative genomics reveal very little divergence between the two genomes but some important differences with the potato genome, another important …
jp, us, ch, cn, it, nl, es, tw, be, il, de, gb, in
(code pays fourni par la source)
Accès ouvert
2011
article
OpenAlex
Dan E. Wells, Laura Beatriz Gutierrez, Zhenkang Xu, Vladimír Krylov et autres
We present a genetic map for Xenopus tropicalis, consisting of 2886 Simple Sequence Length Polymorphism (SSLP) markers. Using a bioinformatics-based strategy, we identified unique SSLPs within the X. tropicalis genome. Scaffolds from X. tropicalis genome assembly 2.0 (JGI) were scanned for Simple …
us, cz, gb
(code pays fourni par la source)
Accès ouvert
2011
article
OpenAlex
Stephen A. Goff, Matthew W. Vaughn, Sheldon McKay, Eric H. Lyons et autres
The iPlant Collaborative (iPlant) is a United States National Science Foundation (NSF) funded project that aims to create an innovative, comprehensive, and foundational cyberinfrastructure in support of plant biology research (PSCIC, 2006). iPlant is developing cyberinfrastructure that uniquely enables scientists throughout the …
us, ca, de
(code pays fourni par la source)
2011
supplementary-materials
OpenAlex
Dan E. Wells, Laura Gutiérrez, Zhenkang Xu, Vladimir V. Krylov et autres
2009
article
OpenAlex
Patrick S. Schnable, Doreen Ware, Robert S. Fulton, Joshua C. Stein et autres
A-Maize-ing Maize is one of our oldest and most important crops, having been domesticated approximately 9000 years ago in central Mexico. Schnable et al. (p. 1112 ; see the cover) present the results of sequencing the B73 inbred maize line. The findings …
us
(code pays fourni par la source)
Accès ouvert
2009
article
OpenAlex
Shiguo Zhou, Fusheng Wei, John D. M. Nguyen, Mike Bechner et autres
About 85% of the maize genome consists of highly repetitive sequences that are interspersed by low-copy, gene-coding sequences. The maize community has dealt with this genomic complexity by the construction of an integrated genetic and physical map (iMap), but this resource alone …
us
(code pays fourni par la source)