Simona Secomandi

Towards complete and error-free genome assemblies of all vertebrate species

SDZWA Admin, Arang Rhie, Shane A. Mccarthy, Olivier Fedrigo et autres

NatureDOI: https://doi.org/10.1038/s41586-021-03451-02021-04-29; Vol 592, Issue 7856; pp 737-746ISSN: 0028-0836, 1476-4687

Towards complete and error-free genome assemblies of all vertebrate species

SDZWA Admin, Arang Rhie, Shane A. Mccarthy, Olivier Fedrigo et autres

NatureDOI: https://doi.org/10.1038/s41586-021-03451-02021-04-29; Vol 592, Issue 7856; pp 737-746ISSN: 0028-0836, 1476-4687

The complete genome of a songbird

Giulio Formenti, Nivesh Jain, Jack A Medico, Marco Sollitto et autres

Bird genomes are the smallest among amniotes; however, they remain challenging to assemble due to their structural complexity. This study presents a fully phased diploid telomere-to-telomere reference genome for the zebra finch (Taeniopygia guttata), a model organism for neuroscience and evolutionary genomics. …

us, it, de, au, br, gb, fr, cy, cz (code pays fourni par la source)

The Vertebrate Genomes Project Phase I: A global reference genome resource

Giulio Formenti, Dominic Absolon, Linelle Abueg, F.J. Ackerman et autres

The Vertebrate Genomes Project (VGP) aims to produce complete and near-error-free reference genomes for all ∼70,000 extant vertebrate species. Organized in four phases, it progressively targets all vertebrate orders, families, genera, and eventually all species. Here we present the completion of VGP …

us, gb, br, pt, au, ca, de, fr, it, bo, nz, cy, dk, mx, kr, es (code pays fourni par la source)

Non-canonical DNA and sequencing challenges in bird genomes

Linnéa Smeds, Jacob P. Sieg, Simona Secomandi, Chul Lee et autres

This is the data related to the preprint:Non-canonical DNA and sequencing challenges in bird genomes, https://www.biorxiv.org/content/10.1101/2025.10.17.683159v2 All code used to produced these files can be found at: https://github.com/makovalab-psu/T2T_bird_nonB

us (code pays fourni par la source)

Non-canonical DNA and sequencing challenges in bird genomes

Linnéa Smeds, Jacob P. Sieg, Simona Secomandi, Chul Lee et autres

This is the data related to the preprint:Non-canonical DNA and sequencing challenges in bird genomes, https://www.biorxiv.org/content/10.1101/2025.10.17.683159v2 All code used to produced these files can be found at: https://github.com/makovalab-psu/T2T_bird_nonB

us (code pays fourni par la source)

A comprehensive reference genome assembly dataset of birds inhabiting Denmark, Greenland, and the Faroe Islands

Daniel Bilyeli Øksnebjerg, Sascha Dreyer Nielsen, Guangji Chen, Michael J Andersen et autres

Reference genome assemblies are essential infrastructure for investigating phylogeny and population/conservation genetics of wild organisms. Birds serve as model vertebrates in ecology and evolutionary biology due to their well-documented natural histories and extensive community science data. We release a set of 350 …

dk, cn, us, es, it, jp, cz, ca, de, Botswana, fr, pl, id, se, no, hk, kz, gb, my, ch, ru, tj, sk, mx, Soudan (code pays fourni par la source)

A comprehensive reference genome assembly dataset of birds inhabiting Denmark, Greenland, and the Faroe Islands.

Daniel Bilyeli Øksnebjerg, Sascha Dreyer Nielsen, Guangji Chen, Michael J Andersen et autres

Background Reference genome assemblies are essential infrastructure for investigating phylogeny, and population/conservation genetics of wild organisms. Birds serve as model vertebrates in ecology and evolutionary biology due to their well-documented natural histories and extensive community science data. Findings We release a set …

Evolutionarily distinct lineages of a migratory bird of prey show divergent responses to climate change

Joan Ferrer, Anastasios Bounas, Mattia Brambilla, Gianluca Lombardo et autres

Accurately predicting species' responses to anthropogenic climate change is hampered by limited knowledge of their spatiotemporal ecological and evolutionary dynamics. We combine landscape genomics, demographic reconstructions, and species distribution models to assess the eco-evolutionary responses to past climate fluctuations and to future …

it, gr, us, ca, kz, Afrique du Sud, il, tr, pt, bg, hr, de, es (code pays fourni par la source)

Author Correction: Pangenome graphs and their applications in biodiversity genomics

Simona Secomandi, Guido Roberto Gallo, Riccardo Rossi, Carlos Fernandes et autres

us, it, pt (code pays fourni par la source)

Pangenome graphs and their applications in biodiversity genomics

Simona Secomandi, Guido Roberto Gallo, Riccardo Rossi, Carlos Fernandes et autres

us, it, pt (code pays fourni par la source)

The Complete Genome of a Songbird

Giulio Formenti, Nivesh Jain, Jack A Medico, Marco Sollitto et autres

us, de, br, gb, it, si, mx, au (code pays fourni par la source)