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Profil bibliographique

Joana Séneca

Informations fournies par OpenAlex. Research Africa ne déduit ni nationalité, ni poste, ni coordonnées personnelles.

72Publications signalées
888Citations signalées
3Affiliations récentes

Les institutions déclarées

Les domaines associés

Microbial Community Ecology and PhysiologyGut microbiota and healthGenomics and Phylogenetic StudiesSoil Carbon and Nitrogen DynamicsMicrobial Natural Products and Biosynthesis

Les publications récentes

Accès ouvert 2026 article OpenAlex

Branched-chain amino acid assimilation enables mixotrophy of ammonia-oxidizing archaeal sponge symbionts

Bettina Glasl, Katharina Kitzinger, Heidi M. Luter, Anton A. Legin et autres

Marine sponges and ammonia-oxidizing archaea (AOA) represent one of the earliest animal-microbe symbioses. AOA are considered metabolically constrained chemolithoautotrophs that remove nitrogenous waste within the sponge holobiont. Here, we expand this view by demonstrating that symbiotic AOA assimilate branched-chain amino acids (BCAA) …

at, au, dk (code pays fourni par la source)

0 citations Science Advances
Accès ouvert 2026 erratum OpenAlex

Corrigendum to: ‘Alcohol intake reprograms hepatic immune-metabolic circuits to exacerbate murine atherosclerosis and human cardiovascular risk’ [JHEP Reports (2026) 19;8(9):101932]

Constanze Hoebinger, Georg Semmler, Oleksandr Petrenko, Dragana Rajcic et autres

In the original publication, Nadja Paeslack was inadvertently omitted from the author list. Nadja Paeslack made substantial contributions to the experimental work involving gnotobiotic Ldlr−/− mice conducted in the laboratory of Prof. Reinhardt. In recognition of these substantial contributions, Nadja Paeslack should …

at, dk, de (code pays fourni par la source)

0 citations JHEP Reports
Accès ouvert 2026 dataset OpenAlex

Reference Genomes used in a Shotgun Sequencing Benchmark Study

Nicole S. Treichel, Charlie Pauvert, Joana Séneca, Petra Pjevac et autres

This dataset includes the metagenome-assembled genomes created for benchmarking of strain-level analysis at different shotgun sequencing depths. Complex mixtures of DNA from up to 70 cultured bacteria in different distributions were sequenced at up to 11 sequencing depths (0.1–50.0 Gb). For assembly …

de, at, nl (code pays fourni par la source)

0 citations Zenodo (CERN European Organization for Nuclear Research)
Accès ouvert 2026 dataset OpenAlex

Reference Genomes used in a Shotgun Sequencing Benchmark Study

Nicole S. Treichel, Charlie Pauvert, Joana Séneca, Petra Pjevac et autres

This dataset includes the metagenome-assembled genomes created for benchmarking of strain-level analysis at different shotgun sequencing depths. Complex mixtures of DNA from up to 70 cultured bacteria in different distributions were sequenced at up to 11 sequencing depths (0.1–50.0 Gb). For assembly …

de, at, nl (code pays fourni par la source)

0 citations Zenodo (CERN European Organization for Nuclear Research)
Accès ouvert 2026 article OpenAlex

Longitudinal integration of microbiota and metabolomics reveals (poly)phenols-driven gut ecosystem dynamics

Catarina J G Pinto, Carlos Pita, Rafael Carecho, Natasa Loncarevic et autres

The gut microbiota and its "theatre of activity" (the collective pool of metabolites and signaling molecules) function as a plastic interface that responds to nutritional inputs. Dietary (poly)phenols are key bioactive components of berries and are increasingly recognized for their capacity to …

us, pt, np, es, at (code pays fourni par la source)

0 citations Frontiers in Nutrition
Accès ouvert 2026 preprint OpenAlex

Gut-derived ammonia modulates hypothalamic stress responses during viral infection

Henrique G. Colaço, Anna Gundacker, Aubrey Burrett, Christian Grozev et autres

Abstract The gut–brain axis integrates microbial and host metabolism to regulate systemic physiology, yet its role during viral infection remains poorly defined. Viral infection induces behavioral changes and neuroendocrine stress responses accompanied by profound alterations in gut microbial metabolism. Here, we show …

at, fr, us (code pays fourni par la source)

0 citations bioRxiv (Cold Spring Harbor Laboratory)
Accès ouvert 2026 article OpenAlex

Alcohol intake reprograms hepatic immune-metabolic circuits to exacerbate murine atherosclerosis and human cardiovascular risk

Constanze Hoebinger, Georg Semmler, Oleksandr Petrenko, Dragana Rajcic et autres

Background and Aims Recent reclassification of steatotic liver disease (SLD) distinguishes metabolic dysfunction-associated steatotic liver disease (MASLD) from MetALD, a newly defined entity combining MASLD with alcohol consumption. Since the mechanisms linking alcohol consumption in the context of SLD to cardiovascular disease …

at, dk, de (code pays fourni par la source)

1 citation JHEP Reports
Accès ouvert 2026 article OpenAlex

Kineochelins—A New Group of Siderophores From an Antarctic Bacterium

Stanislava Králová, Peter Spacek, Johannes Gafriller, Matěj Bezdíček et autres

The global rise of antimicrobial resistance has intensified the search for new microbial metabolites from underexplored environments and taxonomic groups. Extreme and geographically isolated habitats such as Antarctic terrestrial ecosystems represent promising reservoirs of biosynthetic diversity, particularly among rare and difficult-to-cultivate actinomycetes …

at, cz, fr, sk (code pays fourni par la source)

0 citations Microbial Biotechnology
Accès ouvert 2026 article OpenAlex

Imprint of eutrophication on methane-cycling microbes in freshwater sediment

Alice Bosco‐Santos, Eulalie Rose Beyala Bekono, Santona Khatun, Marie‐Ève Monchamp et autres

Abstract. Eutrophication can alter methane (CH4) cycling in lakes, yet its long-term effect on sediment microbial communities remains unclear. To elucidate these effects, we analyzed a 400-year-old sediment record from the historically eutrophied Lake Joux, Switzerland, combining porewater and solid-phase geochemistry with …

ch, ca, at, fr (code pays fourni par la source)

1 citation Biogeosciences
Accès ouvert 2026 article OpenAlex

Benchmarking of shotgun sequencing depth reveals the potential and limitations of shallow metagenomics and strain-level analysis

Nicole S. Treichel, Charlie Pauvert, Joana Séneca, Petra Pjevac et autres

Shotgun metagenomics can provide both taxonomic and functional insights, but benchmarking is necessary to determine the sequencing depth appropriate for specific analyses. Here we used complex mixtures of DNA from cultured bacteria and analysed taxonomic composition, strain-level resolution and functional profiles at …

de, at, nl, hk (code pays fourni par la source)

11 citations Nature Microbiology
Accès ouvert 2026 article OpenAlex

Unveiling the genomes and secondary metabolomes of Streptomyces spp. from freshwater sediments

Inmaculada Tocino-Márquez, Martin Zehl, Jovana Batajic, Joana Séneca et autres

Several Streptomyces strains were isolated from freshwater sediments collected in the Laxenburg ponds (Lower Austria). Genome sequencing and bioinformatics analyses revealed biosynthetic gene clusters (BGCs) that may specify production of chemically diverse secondary metabolites. Various culture conditions were employed to induce metabolite …

at, es (code pays fourni par la source)

2 citations Frontiers in Microbiology
Accès ouvert 2026 dataset OpenAlex

Metagenome-Assembled Genomes Generated in a Shotgun Sequencing Benchmark Study

Nicole S. Treichel, Charlie Pauvert, Joana Séneca, Petra Pjevac et autres

This dataset includes the metagenome-assembled genomes created for benchmarking of strain-level analysis at different shotgun sequencing depths. Complex mixtures of DNA from up to 70 cultured bacteria in different distributions were sequenced at up to 11 sequencing depths (0.1–50.0 Gb). For assembly …

de, at, nl (code pays fourni par la source)

0 citations Zenodo (CERN European Organization for Nuclear Research)

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