TPTBox: Extensive Torso Processing Toolbox for Simple, and Automatic Analysis of CT and MR Imaging

Résumé fourni par la source

The Torso Processing ToolBox (TPTBox) is a multi-functional package to handle any sort of bids-conform dataset (CT, MRI, ...) Features Dataset Handling: Loop over datasets, search query, and find images and their corresponding derivatives I/O Handling: Read and Write nifti files and point coordinate files as JSONs Image Processing: Reorient, Resample, Shift Niftys, Centroids, labels, compute connected components, and so much more Visualization: Modular 2D snapshot generation (different views, maximum intensity projections, depth-color map) 3D Mesh generation: Use 3D segmentations to create 3D meshes and then take snapshots for visualization Registration: Register two images to each other, using available data (image, segmentation, points) Stitching: You have multiple MRI of the same person, split into different regions? Use our stitching algorithm to create one unified view. Logger: Log every function in a file automatically, color important messages in the terminal for easy recognition.

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