jonas-fuchs/BAMdash: v.0.5.0

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Release Summary: v.0.5.0 This release modernizes BAMdash's configuration and build system, adds a multi-reference master page with offline HTML packaging, and introduces a comprehensive test suite plus CI workflow. New features: TOML-based configuration (config.toml) that can be supplied via CLI arguments, replacing the old setup/args-based configuration Master HTML page for multi-reference reports, providing a combined overview across references --offline flag to control whether the Plotly JS is bundled into the exported HTML Structured logging across command, data, and plotting modules Comprehensive test suite (tests/) and GitHub Actions CI workflow with Dependabot config Bug fixes: Fixed a multi-GenBank bug in reference handling Fixed jitter in plotting Changed y-axis from autorange to fixed range Improvements: Visual overhaul of plots and data handling Migrated project metadata from setup.py to pyproject.toml Argument cleanup and validation in command.py Ruff linting fixes across the plotting module Replaced GIF example with a PNG example in the README Breaking changes: Dropped Python 3.9 and 3.10 support CLI arguments changed (renamed/restructured); existing invocations may need updating Configuration now provided via TOML/args rather than the previous setup-based format

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