unum-science/AffineGaps: Release v1.0.0

Le résumé fourni par la source

Release: v1.0.0 [skip ci] Major Break: One repository for the exact biosequence recurrences (a351a07) Minor Add: Mojo implementation with on-GPU backtracking (04614ce) Patch Fix: Pair the shipped table with its alphabet, and size the strip from the card (b902968) Fix: Tile the scores the band refuses, and size the band from the device (b8b6b3a) Make: Name a Metal target so macOS compiles (f6c233e) Improve: Probe backends by value, and price folding against ViennaRNA (e152a73) Fix: Clamp the sweep's frontier read, and make the CLI scriptable (0a42232) Fix: Refuse the scoring the kernels and the tables cannot hold (dccfd04) Fix: Untranspose the stacking rows, and charge the tabulated helix ends (63a04ab) Improve: Time the Gotoh ladder alongside the other two (b973b8d) Fix: Build and measure on Apple silicon (8f71a85) Fix: Extrapolate hairpin loops in single precision (647a2d3) Fix: Build and run where there is no affinity mask (b12ae5a) Improve: Decompose Zuker by leftmost branch, and warp the reductions (c336fff) Improve: Decompose Sankoff by helix rather than bifurcation (9f5b1f1) Docs: Add a citation record (285d073) Make: Create the build directory before writing into it (e6bfa51) Docs: Asymptotes beside the measurements that bound them (71e1f7d) Improve: Make the sweep plan typed and the corner storage linear (503a677) Improve: Sweep every kernel as a skewed register strip (e754549) Improve: Tile the local endpoint scan instead of running it on one block (2f0ecc7) Improve: Make the linear-space test reach the recursion it is named for (85db053) Fix: Confine the open-run privilege to the corner it actually arrives at (9649e52) Improve: Sweep a whole recursion level at once instead of one frame at a time (e1e1530) Fix: Follow the gap-straddling crossing instead of abandoning the recursion (17be917) Improve: Dynamic GPU shared memory, 5x longer sequences, span parameters (b0a75f3) Improve: Widen the test axes rather than add test bodies (414830a) Improve: Collapse the compiled dispatch onto cost records (cf77656) Improve: One Gotoh recurrence and a named traceback automaton (400e8cc) Fix: Rewire NumBa into the backend dispatch (97b1156) Make: Three Mojo platforms, leaner build deps, pinned environment (c0adad5)

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