Metatropics: Human viral pathogen identification and consensus genome calling from nanopore metagenomic sequencing data.

Résumé fourni par la source

Metatropics is a Nextflow pipeline for Oxford Nanopore metagenomic reads, focused on detecting human viral pathogens and creating viral consensus genomes. Workflows start from raw POD5 (with optional GPU basecalling) or pre-basecalled FASTQ, then proceed with read quality control, alignment, host depletion, and taxonomic profiling, followed by consensus genome building—polishing, refinement, and consensus calling. One container image per process keeps runs portable and reproducible under Docker, Singularity/Apptainer, and typical HPC setups.

Ce résumé expose les affirmations des auteurs. BNTIC ne l’interprète pas comme une validation indépendante des résultats.