tatonetti-lab/onsides: OnSIDES v3.2.1

Le résumé fourni par la source

Code-only release — no data changes from v3.1.1. Highlights (v3.2.0 + v3.2.1) Unified PubMedBERT model for all sections (AR, BW, WP) replaces three separate models, with per-section classification thresholds TAC F1: 89.87 (up from 87.54), Recall: 94.68 (up from 84.08) Web-based annotation tool for creating independent reference sets (#31) 30 independently annotated FDA labels as new hold-out evaluation set Snakemake training workflow with 44 experiments across 10 BERT variants (#81) Checkpoint/resume support for interrupted training runs (#30) Curation flag experiments: filtering does not improve performance (#26) Reference set characterization with rebuilt Denmer-Fushman annotations (#27) v3.2.1 patch Fix FK violation in vocab_rxnorm_ingredient_to_product — column order mismatch in Postgres/MySQL schema caused foreign key violations when loading CSVs (#82) Data This release does not include a data update. The most recent data release is v3.1.1.

Ce résumé expose les affirmations des auteurs. BNTIC ne l’interprète pas comme une validation indépendante des résultats.