Methods.
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Table A. Number of Patients Retrospectively Included in the Study for Each Collection Sites in Bamako and Selengue. Table B. Number of Patients Prospectively Recruited for Each Collection Sites in Bamako, Sikasso, Kayes, and Koulikoro. Table C. List of PCR Systems Used for Amplification Assays. Table D. Sequences of Primers Used for 4 Fragments Scheme Specific Amplification of Dengue Viruses. Table E. Alternative Combination of Primer Sequences Used for the Specific 9 Fragments Scheme Amplification of Dengue Virus Serotype 1. Table F. Alternative Combination of Primer Sequences Used for the Specific 8 Fragments Scheme Amplification of Dengue Virus Serotype 2. Table G. Alternative Combination of Primer Sequences Used for the Specific 8 Fragments Scheme Amplification of Dengue Virus Serotype 3. Table H. Sequences of Primers Used for Specific Amplification for Full Genome of Chikungunya Viruses in 8 Fragments. Table I. DENV Serotype Identification for Samples Collected Between 2016 and 2022. Table J. DENV Serotype Identification for Samples Collected Between February 2023 and December 2024. Table K. Sequencing Results for CHIKV and DENV-1–4. Table L. GenBank Accession Numbers and Basic Information of the DENV-1 Sequences from the Study. Table M. GenBank Accession Numbers and Basic Information of the DENV-2 Sequences from the Study. Table N. GenBank Accession Numbers and Basic Information of the DENV-3 Sequences from the Study. Table O. GenBank Accession Numbers and Basic Information of the CHIKV Sequences from the Study. Table P. List of DENV Sequences from French National Reference Center (NRC) for Arboviruses Used in Phylogenetic Analyses. Fig A. Flowchart of Study Participant’s Enrollment and Sample Processing. Fig B. Age Distribution of Patients Enrolled in the Prospective Study. Fig C. Phylogeny Analysis of DENV-2 Genotype II Clade B Sequences. Fig D. Phylogeny Analysis of CHIKV Sequences. Fig E. Root-to-tip Analysis of Sequences Used for Bayesian Inference for DENV-1. Fig F. Root-to-tip Analysis of Sequences Used for Bayesian Inference for DENV-2. Fig G. Root-to-tip Analysis of Sequences Used for Bayesian Inference for DENV-3. (DOCX)