Supplementary data for marine macrogenomics paper

Résumé fourni par la source

These archived datasets were used to summarize NGS data available for marine species. The work is associated with the following paper: DOI: 10.1098/rspb.2026.0357 The following datasets (gziped TSV files) were downloaded from European Nucleotide Archive (ENA): ena_runs.description.tsv.gz : information about sequencing runs of samples ena_samples.description.tsv.gz : information about sequenced samples in studies/projects ena_study.description.tsv.gz : information about sequencing studies/projects The code to generate data statistics including the TSV files above is available in the external data repository https://github.com/andreaswallberg/macrogenomics and archived here: macrogenomics-main.zipThe file README.md in the archive contains information about how to execute the scripts and what they were used for. Supplementary data tables are available here: Supplementary_data.tar.gzContents (also listed in README.txt): Supplementary_data_1.ena_table.samples.species.contemporary.tsv : information about contemporary/modern individual samples of marine species Supplementary_data_2.ena_table.samples.species.ancient.tsv : information about historical/ancient individual samples of marine species Supplementary_data_3.ena_table.samples.metagenomic.contemporary.tsv : information about contemporary/modern marine metagenomic samples Supplementary_data_4.ena_table.samples.metagenomic.ancient.tsv : information about historical/ancient marine metagenomic samples Supplementary_data_5.ena_table.taxa.species.contemporary.tsv : summary statistics at the species level for contemporary/modern individual samples Supplementary_data_6.ena_table.taxa.species.ancient.tsv : summary statistics at the species level for historical/ancient individual samples Supplementary_data_7.ena_table.taxa.metagenomic.contemporary.tsv : summary statistics for contemporary/modern marine metagenomic samples Supplementary_data_8.ena_table.taxa.metagenomic.ancient.tsv : summary statistics for historical/ancient marine metagenomic samples Supplementary_data_9.ena_table.taxa.species.contemporary.tsv.world.stats.libraries.tsv : summary statistics at the group level for contemporary/modern individual samples Supplementary_data_10.ena_table.taxa.species.ancient.tsv.world.stats.libraries.tsv : summary statistics at the group level for historical/ancient individual samples Supplementary_data_11.ena_table.taxa.metagenomic.contemporary.merged.tsv : summary statistics for marine metagenomes Supplementary_data_12.ena_table.samples.species.contemporary.tsv.timeline.merged.tsv : summary statistics for data availability over time Supplementary_data_13.ena_table.samples.species.contemporary.tsv.groups.tsv.annotated_ocean_bodies.tsv : information about contemporary/modern individual samples of marine species with appended geolocation information Supplementary_data_14.ena_table.samples.species.contemporary.tsv.groups.tsv.annotated_ocean_bodies.tsv.summary.tsv : summary of geolocation information by ocean body

Ce résumé expose les affirmations des auteurs. BNTIC ne l’interprète pas comme une validation indépendante des résultats.