ClarkLaboratory/IsoLamp: v1.1.0 — oarfish quantification

Résumé fourni par la source

What's changed Quantifier Replaced salmon with oarfish as the sole isoform quantifier Deleted bin/combine_salmon_quants.R (dead code) Environment oarfish upgraded 0.9.0 python upgraded from 3.7 (EOL) to 3.11 Pinned r-xgboost<2.1 — fixes a crash in bambu's read-class step (xgb.Booster object is corrupted or from an incompatible XGBoost version); bambu 3.4.0's pre-trained model requires the pre-2.1.0 xgboost serialization format Replaced the previous 363-package build-pinned environment dump with a minimal high-level spec — resolves the conda Found conflicts hang that occurred with the old IsoLamp_env.yml Channels trimmed to conda-forge + bioconda only

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