github.com/iwc-workflows/fastq-to-matrix-10x/scrna-seq-fastq-to-matrix-10x-cellplex

Résumé fourni par la source

Comprehensive preprocessing for 10X Genomics CellPlex multiplexed single-cell RNA-seq data. Processes Cell Multiplexing Oligo (CMO) FASTQ files with CITE-seq-Count including required CellPlex-specific translation steps. Simultaneously processes gene expression FASTQ files with STARsolo and DropletUtils for alignment and cell filtering, and formats outputs for seamless import into Seurat/Scanpy (Read10X function).