Population Structure in Squalius laietanus: Evidence from mtDNA Control Region Diversity

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Introduction: The Catalan chub (Squalius laietanus) is a freshwater cyprinid endemic to Catalonia, from the lower course of the Ebro River to the Tech, Tet, Agly, and Massane rivers in France. Classified as Vulnerable in the IUCN Red List (2024), its populations face significant threats due to anthropogenic pressures and the potential hybridization with the European chub (Squalius cephalus). Objective: This study aimed to characterize the genetic variation of the mitochondrial control region (CR) of S. laietanus across the main Catalan river basins to determine the population genetic structure of this species in the core of its distribution range. Methodology: A 789 bp fragment of the CR was sequenced in 334 chubs from 24 sampling sites collected by electrofishing between 2021 and 2025. The S. laietanus specific matrilineage of all these specimens had been previously detected by sequencing the Cytochrome c oxidase subunit I (COI) but this marker did not detect clear genetic structuring among basins. Results: In contrast to the low diversity within and among locations reported by COI, the CR showed a population structure distinguishing between northern (Muga, Fluvià, Daró, Ter, and Tordera rivers) and southern basins (Besòs, Llobregat, Gaià, Francolí, and Ebro rivers). In the southern rivers, a single haplotype, (H1), was present. This haplotype declined in abundance towards the north, being replaced with H2. In the Muga River, native Catalan chub populations showed the fixed H3 haplotype, suggesting strong isolation, while populations from the Daró River contained a private haplotype (H4). In contrast, the presence of a common and single haplotype in southern basins possibly resulted from genetic drift under strong summer droughts. Conclusions: Overall, these results reveal population structuring in S. laietanus and highlight the importance of considering regional differentiation in conservation and management strategies.

Ce résumé expose les affirmations des auteurs. BNTIC ne l’interprète pas comme une validation indépendante des résultats.