Accès ouvert déclaré2026preprint

Bioconductor Spatial Data and Image Analysis Hackathon

Helena L. Crowell, Luca Marconato, Ilaria Billato, Matteo Calgaro, Robert Castelo, Riccardo Ceccaroni, Carissa Chen, Patrick Danaher, Sean Davis, Martin Emons, Gabriel Grajeda, Hugo Gruson, Samuel Gunz, Juan Henao, Rafael Irizarry, Sviatoslav Kharuk, Daria Lazic, Artür Manukyan, Pere Moles-Seró, E. Purdom, Dario Righelli, Gabriele Sales, Mike L. Smith, Charlotte Soneson, Michael B. Stadler, Wolfgang Huber, Davide Risso

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We report the outcomes of the Bioconductor Spatial Data and Image Analysis Hackathon, held in Venice, Italy in April 2026. Twenty-seven researchers and software developers organized into four teams to advance R/Bioconductor capabilities for spatial omics and image analysis. Outputs include scalable raster–polygon workflows for whole-slide pathology, an R package for running spatial foundation models via reticulate/basilisk, a spatially stratified differential expression framework, and substantial enhancements to the R `SpatialData` infrastructure for interoperability with the Python `spatialdata` ecosystem. All software is openly available and under active development.

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Biomedical and Engineering EducationGenetics, Bioinformatics, and Biomedical ResearchConferences and Exhibitions Management

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