Accès ouvert déclaré 2026 dataset

Transposable elements annotation

Kaede Hirabayashi, Christopher R. Dumigan, Matúš Kučka, Diana M. Percy, Gea Guerriero, Eric Gonzalez, Quentin Cronk, Michael K. Deyholos, Marco Todesco

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Résumé fourni par la source

Transposable elements (TEs) annotation of stinging nettle (Urtica dioica ssp. dioica) genomes using EDTA. The .tar.gz file contains the following files:Figshare_uploads_TE.tar.gz:TE annotation of Female haplotype 1 chromosomes in .gff3 (Nettle_female_H1.chr.fa.mod.EDTA.TEanno.gff3)TE annotation of Female haplotype 2 chromosomes in .gff3 (Nettle_female_H2.chr.fa.mod.EDTA.TEanno.gff3)TE annotation of Female haplotype 1 non-chromosomal contigs in .gff3 (Nettle_female_H1_non_chr_scaff.fa.mod.EDTA.TEanno.gff3)TE annotation of Female haplotype 2 non-chromosomal contigs in .gff3 (Nettle_female_H2_non_chr_scaff.fa.mod.EDTA.TEanno.gff3)TE annotation of Female haplotype 1 chromosomes in .bed (Nettle_female_H1.chr.fa.mod.EDTA.TEanno.bed)TE annotation of Female haplotype 2 chromosomes in .bed (Nettle_female_H2.chr.fa.mod.EDTA.TEanno.bed)TE annotation of Female haplotype 1 non-chromosomal contigs in .bed (Nettle_female_H1_non_chr_scaff.fa.mod.EDTA.TEanno.bed)TE annotation of Female haplotype 2 non-chromosomal contigs in .bed (Nettle_female_H2_non_chr_scaff.fa.mod.EDTA.TEanno.bed)Figshare_uploads_TE_male.tar.gz:TE annotation of Male haplotype 1 in .gff3 (Nettle_male_H1_Round_3_genome_reoriented_no_contamination_for_EDTA.fa.mod.EDTA.TEanno.gff3)TE annotation of Male haplotype 2 in .gff3 (Nettle_male_H2_Round_3_genome_reoriented_no_contamination_for_EDTA.fa.mod.EDTA.TEanno.gff3)TE annotation of Male haplotype 1 in .bed (Nettle_male_H1_Round_3_genome_reoriented_no_contamination_for_EDTA.fa.mod.EDTA.TEanno.bed)TE annotation of Male haplotype 2 in .bed (Nettle_male_H2_Round_3_genome_reoriented_no_contamination_for_EDTA.fa.mod.EDTA.TEanno.bed)EDTA summary report of Male haplotype 1 (Nettle_male_H1_Round_3_genome_reoriented_no_contamination_for_EDTA.fa.mod.EDTA.TEanno.sum)EDTA summary report of Male haplotype 2 (Nettle_male_H2_Round_3_genome_reoriented_no_contamination_for_EDTA.fa.mod.EDTA.TEanno.sum)Annotated TE sequences in .fasta for Male haplotype 1 (Nettle_male_H1_Round_3_genome_reoriented_no_contamination_for_EDTA.fa.mod.EDTA.TE.fa)Annotated TE sequences in .fasta for Male haplotype 2 (Nettle_male_H2_Round_3_genome_reoriented_no_contamination_for_EDTA.fa.mod.EDTA.TE.fa)

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