Novel insights into the genome organization of Rhizobiaceae : identification of linear plasmids
Rattachement africain : de, au, pl, Nigéria, us, ca. Niveau de preuve : code pays fourni par la source.
Le résumé fourni par la source
2. Abstract Members of the family Rhizobiaceae typically have multipartite genomes, that are split between two or more replicons, including the chromosome and a variable number of extrachromosomal replicons (chromids and plasmids). Nearly all Rhizobiaceae replicons sequenced and described to date have a circular topology, with the exception of the linear chromid found in the genomes of most Agrobacterium spp. In this study, genomes of five nonpathogenic Agrobacterium strains and one plant tumorigenic Allorhizobium strain were fully sequenced. Surprisingly, genome analysis revealed that these six strains each carry an 80-kbp linear plasmid. Linear plasmids were so far not identified in this bacterial family or other bacteria within the class Alphaproteobacteria . The ends of all six plasmids identified in this study have a hairpin structure with covalently closed ends. The plasmid sequences showed a high degree of homology, clearly indicating their common ancestry. Database searches led to the identification of additional linear plasmids in previously published Rhizobiaceae genome assemblies that were not previously recognized to have linear plasmids, suggesting that these replicons may be more widespread. Most likely, linear plasmids may be even more widely distributed than anticipated. Although the biological functions of the linear plasmids identified in this study remain unknown, they are associated with both nonpathogenic and plant tumorigenic Rhizobiaceae strains. 3. Impact statement The family Rhizobiaceae includes some remarkable and important representatives, such as plant symbiotic bacteria (rhizobia) and plant pathogenic bacteria associated with neoplasia (agrobacteria). In this study, the complete genome sequences of six Rhizobiaceae strains were generated and their genome organizations were examined. Strikingly, our results showed that these six strains harbor a linear plasmid. Moreover, GenBank searches suggested that linear plasmids may be even more widespread in the family Rhizobiaceae . Linear plasmids may go undetected in genome sequencing studies if the assemblies are not specifically examined for linear plasmid. Overall, this study provides further evidence for the extraordinary genome plasticity of members of the family Rhizobiaceae and expands the taxonomic range in which linear plasmids have been identified. To the best of our knowledge, this is the first report of linear plasmids in the family Rhizobiaceae or the class Alphaproteobacteria . 4. Data summary The whole-genome sequences have been deposited at DDBJ/ENA/GenBank under the accessions CP192696 - CP192701 (Av2), CP000000 - CP000000 (rho-7.1), CP000000-CP000000 (rho-8.1), CP000000-CP000000 (rho-11.1), CP000000-CP000000 (rho-13.3), and CP000000-CP000000 (rho-14.1), within the BioProjects PRJNA557463 and PRJNA1009994. The raw sequencing reads were deposited in the Sequence Read Archive (SRA) under the same BioProjects PRJNA557463 and PRJNA1009994: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA557463 and https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1009994 . NCBI submission for five genome sequences is undergoing processing and accession numbers will be added when available; in https://figshare.com/s/29a9e621adc1b66d0957
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Le contrôle bibliographique ouvert
DOI retrouvé dans Crossref DOI retrouvé, mais le titre doit être comparé manuellement.
- Titre Crossref
- Novel insights into the genome organization of <i>Rhizobiaceae</i> : identification of linear plasmids
- Date Crossref
- 01/06/2025
- Éditeur
- openRxiv
- Type
- posted-content
Ce recoupement confirme des métadonnées liées au DOI. Il ne confirme ni la méthode ni les conclusions de l’étude, et il ne compte pas comme une seconde source scientifique indépendante.
Où se fait cette recherche
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Julius Kühn-Institut pays non établi dans la noticeOrganisme public
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The University of Melbourne Department of Microbiology and Immunology pays non établi dans la noticeUniversité ou école supérieure
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Peter Doherty Institute pays non établi dans la noticeStructure de recherche
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Maria Curie-Skłodowska University Department of Genetics and Microbiology pays non établi dans la noticeUniversité ou école supérieure
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National Horticultural Research Institute Nigéria (code pays fourni par la source)Structure de recherche
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Horticultural Research Institute pays non établi dans la noticeOrganisation à but non lucratif
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Instytut Ogrodnictwa – Państwowy Instytut Badawczy pays non établi dans la noticeOrganisme public
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Queen's University Department of Biology pays non établi dans la noticeUniversité ou école supérieure
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University of Calgary Department of Biological Sciences pays non établi dans la noticeUniversité ou école supérieure
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Julius Kuehn Institute (JKI) - Federal Research Centre for Cultivated Plants pays non établi dans la noticeStructure de recherche
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Maria Curie-Sk?odowska University Department of Genetics and Microbiology pays non établi dans la noticeUniversité ou école supérieure
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The National Institute of Horticultural Research pays non établi dans la noticeStructure de recherche
Julius Kühn-Institut, Department of Microbiology and Immunology — The University of Melbourne et Peter Doherty Institute, avec 9 autres affiliations. Pays d’affiliation : Nigéria.
Une affiliation ne permet pas de déduire la nationalité d’un auteur.