scribl: A system for the semantic capture of relationships in biological literature

Résumé fourni par la source

scribl (Semantic Capture of Relationships in Biological Literature) is a Python software pipeline and API that transforms a Zotero literature database with entries annotated with tags in the scribl language to create a graph data structure, suitable for import into a graph database platform, such as Neo4j, or Python's NetworkX. The scribl language was designed for the curation from scientific articles, to capture the relationships between the various biological agents and the processes that they describe in a connected network.

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