Replication Data for: SARS-CoV-2 Omicron Variant of Concern in Seychelles: Introduction and Spread

Résumé fourni par la source

This is a replication dataset for the manuscript titled: "SARS-CoV-2 Omicron Variant of Concern in Seychelles: Introduction and Spread." The study is part of a regional collaborative COVID-19 public health rapid response initiative overseen by WHO-AFRO and Africa-CDC do decribe the SARS-CoV-2 genomic epidemiology in Africa. Data package includes R and python scripts used to analyze data: Figure1.R - This r code plots the Seychelles government intervention levels, number of daily COVID-19 cases, the temporal patterns of SARS CoV-2 Lineages in Seychelles. Figure2.R - This r code plots the Omicron lineages phylogenetic tree of BA.1-like, BA.1-like, BA.1-like, BA.1-like lineages. Figure3.R Figure4.R - This r code plots the number of transition events between Seychelles and the rest of world. SuppFig1.R - This r code plots the number of daily COVID-19 cases from March 2020 to September 2022 and highlights the period when Omicron VOC was circulating. SuppFig2.R - This r code plots the number of transition events between discrete locations i.e within Seychelles AncestralChanges.py

Ce résumé expose les affirmations des auteurs. BNTIC ne l’interprète pas comme une validation indépendante des résultats.