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Scalar Relativistic All-Electron and Pseudopotential Ab Initio Study of a Minimal Nitrogenase [Fe(SH)4H]− Model Employing Coupled-Cluster and Auxiliary-Field Quantum Monte Carlo Many-Body Methods

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Le résumé fourni par la source

High Resolution Image Download MS PowerPoint Slide Nitrogenase is the only enzyme that can cleave the triple bond in N 2, making nitrogen available to organisms. The detailed mechanism of this enzyme is currently not known, and computational studies are complicated by the fact that different density functional theory (DFT) methods give very different energetic results for calculations involving nitrogenase models. Recently, we designed a [Fe(SH) 4 H] − model with the fifth proton binding either to Fe or S to mimic different possible protonation states of the nitrogenase active site. We showed that the energy difference between these two isomers (Δ E ) is hard to estimate with quantum-mechanical methods. Based on nonrelativistic single-reference coupled-cluster (CC) calculations, we estimated that the Δ E is 101 kJ/mol. In this study, we demonstrate that scalar relativistic effects play an important role and significantly affect Δ E . Our best revised single-reference CC estimates for Δ E are 85–91 kJ/mol, including energy corrections to account for contributions beyond triples, core–valence correlation, and basis-set incompleteness error. Among coupled-cluster approaches with approximate triples, the canonical CCSD(T) exhibits the largest error for this problem. Complementary to CC, we also used phaseless auxiliary-field quantum Monte Carlo calculations (ph-AFQMC). We show that with a Hartree–Fock (HF) trial wave function, ph-AFQMC reproduces the CC results within 5 ± 1 kJ/mol. With multi-Slater-determinant (MSD) trials, the results are 82–84 ± 2 kJ/mol, indicating that multireference effects may be rather modest. Among the DFT methods tested, τ-HCTH, r 2 SCAN with 10–13% HF exchange with and without dispersion, and O3LYP/O3LYP-D4, and B3LYP*/B3LYP*-D4 generally perform the best. The r 2 SCAN12 (with 12% HF exchange) functional mimics both the best reference MSD ph-AFQMC and CC Δ E results within 2 kJ/mol.

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DOI retrouvé dans Crossref DOI retrouvé, mais le titre doit être comparé manuellement.

Titre Crossref
Scalar Relativistic All-Electron and Pseudopotential <i>Ab Initio</i> Study of a Minimal Nitrogenase [Fe(SH)<sub>4</sub>H]<sup>−</sup> Model Employing Coupled-Cluster and Auxiliary-Field Quantum Monte Carlo Many-Body Methods
Date Crossref
07/02/2024
Éditeur
American Chemical Society (ACS)
Type
journal-article

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Les sujets associés

Advanced Chemical Physics StudiesMetalloenzymes and iron-sulfur proteinsAmmonia Synthesis and Nitrogen Reduction

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