Accès ouvert déclaré 2022 article

Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance

Patrick Munk, Christian Brinch, Frederik Duus Møller, Thomas Nordahl Petersen, René S. Hendriksen, Anne Mette Seyfarth, Jette Sejer Kjeldgaard, Christina Aaby Svendsen, Bram van Bunnik, Fanny Berglund, Artan Bego, P.P. Power, Catherine A. Rees, Dionisia Lambrinidis, Elizabeth Heather Jakobsen Neilson, Karen Gibb, Kris Coventry, Peter Collignon, Susan Cassar, Franz Allerberger, Anowara Begum, Zenat Zebin Hossain, Carlon Worrell, Olivier Vandenberg, Ilse Y. Pieters, Victorien Dougnon, Angela Daniela Salazar Gutierrez, Freddy Soria, Vesna Rudić Grujić, Nataša Mazalica, Teddie O. Rahube, Carlos Alberto Tagliati, Dália dos Prazeres Rodrigues, Guilherme Oliveira, Larissa Camila Ribeiro de Souza, Ivan Ivanov, Bonkoungou Isidore Juste, Traoré Soumana Oumar, Thet Sopheak, Yith Vuthy, Antoinette Ngandjio, Ariane Nzouankeu, Ziem A. Abah Jacques Olivier, Christopher K. Yost, Pratik Kumar, Satinder Kaur Brar, Djim-Adjim Tabo, Aiko D. Adell, Esteban Paredes-Osses, Maria Cristina Martinez, Changwen Ke, Huanying Zheng, Li Baisheng, Lok Ting Lau, Teresa Chung, Xiaoyang Jiao, Yongjie Yu, Zhao JiaYong, Johan F. Bernal Morales, María Fernanda Valencia, Pilar Donado-Godoy, Kalpy Julien Coulibaly, Jasna Hrenović, Matijana Jergović, Renáta Karpíšková, Zozo Nyarukweba Deogratias, Bodil Elsborg, Lisbeth Truelstrup Hansen, Pernille Erland Jensen, M. Abouelnaga, Mohamed A. Salem, Marliin Koolmeister, Mengistu Legesse, Tadesse Eguale, Annamari Heikinheimo, Soizick Le Guyader, Julien Schaeffer, José E. Villacís, Bakary Sanneh, Lile Malania, Andreas Nitsche, Annika Brinkmann, Sara Schubert, Sina Hesse, Thomas U. Berendonk, Courage Kosi Setsoafia Saba, Jibril Mohammed, Patrick Kwame Feglo, Regina Ama Banu, Charalampos Kotzamanidis, Efthymios Lytras, Sergio A. Lickes, Béla Kocsis, Norbert Solymosi, Thorunn R. Thorsteinsdottir, A. A. Mohamed Hatha, Mamatha Ballal, Sohan Rodney Bangera, Fereshteh Fani, Masoud Alebouyeh, Dearbháile Morris, Louise O’Connor, Martin Cormican, Jacob Moran‐Gilad, Antonio Battisti, Elena Lavinia Diaconu, Gianluca Corno, Andrea Di Cesare, Patricia Alba, Junzo Hisatsune, Liansheng Yu, Makoto Kuroda, Motoyuki Sugai, Shizuo Kayama, Zeinegul Shakenova, Ciira Kiiyukia, Eric Ng’eno, Lul Raka, Kazi Jamil, Saja A. Fakhraldeen, Tareq Alaati, Aivars Bērziņš, Jeļena Avsejenko, Madara Streikiša, Vadims Bartkevičs, Ghassan M. Matar, Ziad Daoud, Asta Pereckienė, Ceslova Butrimaite‐Ambrozeviciene, Christian Penny, Alexandra Bastaraud, Tiavina Rasolofoarison, Jean‐Marc Collard, Luc Hervé Samison, Mala Rakoto‐Andrianarivelo, Daniel Lawadi Banda, Arshana Amin, Sivachandran Parimannan, David Spiteri, Malcolm Vella Haber, Sunita J. Santchurn, Aleksandar Vujacic, Dijana Djurović, Brahim Bouchrif, Bouchra Karraouan, Delfino Vubil, Pushkar Pal, Heike Schmitt, Mark van Passel, Gert‐Jan Jeunen, Neil J. Gemmell, Stephen T. Chambers, Fania Perez Mendoza, Jorge Huete-Pιrez, Samuel Vilchez, Akeem Olayiwola Ahmed, Ibrahim Raufu Adisa, Ismail Ayoade Odetokun, Kayode Fashae, Anne-Marie Sørgaard, Astrid Louise Wester, Pia Ryrfors, Rune Holmstad, Mashkoor Mohsin, Rumina Hasan, Sadia Shakoor, Natalie Weiler Gustafson, Claudia Huber Schill, Maria Luz Zamudio Rojas, Jorge Echevarria Velasquez, Bonifacio B. Magtibay, Kris Catangcatang, Ruby Sibulo, Felipe Campos Yauce, Dariusz Wasyl, Célia M. Manaia, Jaqueline Rocha, José C. Martins, Pedro Cuesta Álvaro, Doris Yoong Wen Di, Hanseob Shin, Hor‐Gil Hur, Sukhwan Yoon, Golubinka Boševska, Mihail Kochubovski, Radu Cojocaru, Olga Burduniuc, Pei‐Ying Hong, Meghan Perry, Amy Gassama, Vladimir Radosavljević, Moon Y. F. Tay, Rogelio Zuniga-Montanez, Stefan Wuertz, Dagmar Gavačová, Katarína Pastuchová, Peter Truska, Marija Trkov, Karen H. Keddy, Kerneels Esterhuyse, Min Song, Marcos Quintela‐Baluja, Mariano Gómez López, Marta Cerdà‐Cuéllar, R. R. D. P. Perera, N.K.B.K.R.G.W. Bandara, H. I. Premasiri, Sujatha Pathirage, Kareem Charlemagne, Carolin Rutgersson, Leif Norrgren, Stefan Örn, R. Boss, Tanja Van der Heijden, Yu-Ping Hong, Happiness Kumburu, Robinson H. Mdegela, Yaovi Mahuton Gildas Hounmanou, Kaknokrat Chonsin, Orasa Suthienkul, Visanu Thamlikitkul, Ana Maria de Roda Husman, Bawimodom Bidjada, Berthe‐Marie Njanpop‐Lafourcade, Somtinda Christelle Nikiema-Pessinaba, Belkıs Levent, Cemil Kürekçi, Francis Ejobi, John Bosco Kalule, Jens Thomsen, Ouidiane Obaidi, Laila Mohamed Jassim, Andrew S. Moore, Anne Leonard, David W. Graham, Joshua T. Bunce, Lihong Zhang, William H. Gaze, Brett Lefor, Drew Capone, Emanuele Sozzi, Joe Brown, John Scott Meschke, Mark D. Sobsey, Michael C. Davis, Nicola K. Beck, Pardi Sukapanpatharam, Phuong Kim Truong, Ronald Lilienthal, Sanghoon Kang, Thomas E. Wittum, Natalia Rigamonti, Patricia Baklayan, Chinh Dang Van, Doan Minh Nguyen Tran, Nguyen Do Phuc, Geoffrey Kwenda, D. G. Joakim Larsson, Marion Koopmans, Mark Woolhouse, Frank M. Aarestrup

303Citations signalées, ce qui n’est pas une note de qualité
150Institutions déclarées
93Pays d’affiliation déclarés

Rattachement africain : dk, gb, se, al, ar, au, at, bd, bb, be, Bénin, ba, Botswana, br, bg, Burkina Faso, kh, Cameroun, ca, in, Tchad, cl, cn, hk, co, Côte d’Ivoire, hr, cz, Égypte, Éthiopie, fi, fr, ec, Gambie, ge, de, Ghana, gr, gt, hu, is, ir, ie, il, it, jp, Kenya, xk, kw, lv, lb, us, lu, Madagascar, Malawi, my, mt, Maurice, me, Maroc, Mozambique, np, nl, nz, ni, Nigéria, no, pk, py, pe, ph, pl, pt, kr, mk, md, sa, Sénégal, sg, sk, si, es, lk, lc, ch, Tanzanie, th, Togo, tr, Ouganda, ae, uy, Zambie. Niveau de preuve : code pays fourni par la source.

Le résumé fourni par la source

Antimicrobial resistance (AMR) is a major threat to global health. Understanding the emergence, evolution, and transmission of individual antibiotic resistance genes (ARGs) is essential to develop sustainable strategies combatting this threat. Here, we use metagenomic sequencing to analyse ARGs in 757 sewage samples from 243 cities in 101 countries, collected from 2016 to 2019. We find regional patterns in resistomes, and these differ between subsets corresponding to drug classes and are partly driven by taxonomic variation. The genetic environments of 49 common ARGs are highly diverse, with most common ARGs carried by multiple distinct genomic contexts globally and sometimes on plasmids. Analysis of flanking sequence revealed ARG-specific patterns of dispersal limitation and global transmission. Our data furthermore suggest certain geographies are more prone to transmission events and should receive additional attention.

Ce résumé expose les affirmations des auteurs. BNTIC ne l’interprète pas comme une validation indépendante des résultats.

Le contrôle bibliographique ouvert

DOI retrouvé dans Crossref DOI retrouvé ; titre concordant.

Titre Crossref
Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance
Date Crossref
01/12/2022
Éditeur
Springer Science and Business Media LLC
Type
journal-article

Ce recoupement confirme des métadonnées liées au DOI. Il ne confirme ni la méthode ni les conclusions de l’étude, et il ne compte pas comme une seconde source scientifique indépendante.

Les institutions déclarées

Technical University of DenmarkCentre for Immunity, Infection and EvolutionUniversity of EdinburghUniversity of GothenburgUniversity of Medicine TiranaInstitute of Public HealthUniversidad de Buenos AiresMelbourne WaterCharles Darwin UniversityUniversity of CopenhagenFrederiksberg HospitalCanberra HospitalMedical Developments International (Australia)Austrian Agency for Health and Food SafetyUniversity of DhakaBarbados Community CollegeAquaplus (Belgium)Université d'Abomey-CalaviUniversity of Banja LukaPublic Health Institute of the Republic of SrpskaBotswana International University of Science and TechnologyUniversidade Federal de Minas GeraisFundação Oswaldo CruzVale (Brazil)National Center of Infectious and Parasitic DiseasesUniversité Joseph Ki-ZerboInstitut Pasteur du CambodgeCentre Pasteur du CamerounUniversity of ReginaInstitut National de la Recherche ScientifiqueIndian Institute of Technology JammuYork UniversityUniversity of N'DjamenaUniversidad Andrés BelloInstituto de Salud Pública de ChileCatholic University of the MauleGuangdong Provincial Center for Disease Control and PreventionHong Kong Polytechnic UniversityShantou UniversityShantou University Medical CollegeNanjing University of Information Science and TechnologyHenan Provincial Center for Disease Control and PreventionColombian Corporation for Agricultural Research - AGROSAVIAInstitut Pasteur de Côte d'IvoireUniversity of ZagrebAndrija Stampar Teaching Institute of Public HealthVeterinary Research InstituteSuez Canal UniversityUniversity of Sadat CityAddis Ababa UniversityUniversity of HelsinkiIfremerInstituto Nacional de Investigación en Salud PúblicaMinistry of Health and Social WelfareNational Center for Disease Control and Public HealthRobert Koch InstituteTechnische Universität DresdenUniversity for Development StudiesUniversity of GhanaKwame Nkrumah University of Science and TechnologyCouncil for Scientific and Industrial ResearchEYDAP (Greece)Universidad de San Carlos de GuatemalaSemmelweis UniversityUniversity of Veterinary MedicineUniversity of IcelandCochin University of Science and TechnologyKasturba Medical College, ManipalMangalore Institute of OncologyShiraz University of Medical SciencesShahid Beheshti University of Medical SciencesOllscoil na Gaillimhe – University of GalwayBen-Gurion University of the NegevIstituto Zooprofilattico Sperimentale delle Regioni Lazio e ToscanaWater Research InstituteNational Institute of Infectious DiseasesMount Kenya UniversityKenya Medical Research InstituteUniversity of PrishtinaKuwait Institute for Scientific ResearchInstitute of Food Safety, Animal Health and Environment “BIOR”American University of BeirutCentral Michigan UniversityLuxembourg Institute of Science and TechnologyInstitut Pasteur de MadagascarUniversity of AntananarivoUniversity of MalawiMalaysia Genome InstituteAIMST UniversityWater Services Corporation (Malta)Ministry for HealthUniversity of MauritiusUniversity of MontenegroInstitut Pasteur du MarocManhiça Health Research CentreAgriculture and Forestry UniversityNational Institute for Public Health and the EnvironmentUniversity of OtagoCentral University of NicaraguaUniversidad del Norte de NicaraguaUniversity of IlorinUniversity of IbadanNorwegian Institute of Public HealthUniversity of Agriculture FaisalabadAga Khan UniversityMinisterio de Salud Pública y Bienestar SocialInstituto Nacional de SaludUniversity of PiuraPartnerships in Environmental Management for the Seas of East AsiaNational Veterinary Research InstituteUniversidade Católica PortuguesaÁguas de Portugal (Portugal)Gwangju Institute of Science and TechnologyKorea Advanced Institute of Science and TechnologyInstitute of public health of Republic of MacedoniaMoldova State UniversityKing Abdullah University of Science and TechnologyInstitut Pasteur de DakarNanyang Technological UniversityPublic Health Authority of the Slovak RepublicNational Laboratory of Health, Environment and FoodCentre de Recerca en Sanitat AnimalUniversity of KelaniyaMedical Research InstituteCaribbean Environmental Health InstituteSwedish University of Agricultural SciencesFederal Food Safety and Veterinary OfficeKilimanjaro Christian Medical CentreSokoine University of AgricultureSuratthani Rajabhat UniversityMahidol UniversitySiriraj HospitalTogolese Ministry of HealthMustafa Kemal UniversityMakerere UniversityAbu Dhabi Health ServicesRashid HospitalNorthumbrian Water Group (United Kingdom)University of ExeterNewcastle UniversityUniversity of North Carolina at Chapel HillUniversity of WashingtonBaylor UniversityWarner Pacific CollegeEastern Illinois UniversityThe Ohio State UniversityLaboratorio Tecnológico del UruguayUniversity of ZambiaErasmus MCErasmus University Rotterdam

Une affiliation ne permet pas de déduire la nationalité d’un auteur.

Les sujets associés

Pharmaceutical and Antibiotic Environmental ImpactsAntibiotic Resistance in BacteriaMicrobial Community Ecology and Physiology
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