Accès ouvert déclaré 2020 article

FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles

Sergei Põlme, Kessy Abarenkov, R. Henrik Nilsson, Björn D. Lindahl, Karina E. Clemmensen, Håvard Kauserud, Nhu Nguyen, Rasmus Kjøller, Scott T. Bates, Petr Baldrián, Tobias Guldberg Frøslev, Kristjan Adojaan, Alfredo Vizzini, Ave Suija, Donald H. Pfister, Hans-Otto Baral, Helle Järv, Hugo Madrid, Jenni Nordén, Jian‐Kui Liu, Julia Pawłowska, Kadri Põldmaa, Kadri Pärtel, Kadri Runnel, Karen Hansen, Karl-Henrik Larsson, Kevin D. Hyde, Marcelo Sandoval‐Denis, Matthew E. Smith, Merje Toome‐Heller, Nalin N. Wijayawardene, Nelson Menolli, Nicole K. Reynolds, Rein Drenkhan, Sajeewa S. N. Maharachchikumbura, Tatiana Baptista Gibertoni, Thomas Læssøe, William J. Davis, Yuri S. Tokarev, Adriana Corrales, Adriene Mayra Soares, Ahto Agan, Alexandre Reis Machado, Andrés Argüelles‐Moyao, Andrew P. Detheridge, Angelina de Meiras-Ottoni, Annemieke Verbeken, Arun Kumar Dutta, Bao‐Kai Cui, C. K. Pradeep, César Marín, Daniel E. Stanton, Daniyal Gohar, Dhanushka N. Wanasinghe, Eveli Otsing, Farzad Aslani, Gareth Griffith, Thorsten Lumbsch, Hans‐Peter Grossart, Hossein Masigol, Ina Timling, Inga Hiiesalu, Jane Oja, John Y. Kupagme, József Geml, Julieta Alvarez‐Manjarrez, Kai Ilves, Kaire Loit, Kalev Adamson, Kazuhide Nara, Kati Küngas, Keilor Rojas-Jiménez, Krišs Bitenieks, László Irinyi, László G. Nagy, Liina Soonvald, Li-Wei Zhou, Lysett Wagner, M. Catherine Aime, Maarja Öpik, María Isabel Mujica, Martin Metsoja, Martin Ryberg, Martti Vasar, Masao Murata, Matthew P. Nelsen, Michelle Cleary, Milan C. Samarakoon, Mingkwan Doilom, Mohammad Bahram, Niloufar Hagh‐Doust, Olesya Dulya, Peter R. Johnston, Petr Kohout, Qian Chen, Qing Tian, Rajasree Nandi, Rasekh Amiri, Rekhani H. Perera, Renata dos Santos Chikowski, Renato Lúcio Mendes Alvarenga, Roberto Garibay‐Orijel, Robin Gielen, Rungtiwa Phookamsak, Ruvishika S. Jayawardena, Saleh Rahimlou, Samantha C. Karunarathna, Saowaluck Tibpromma, Shawn P. Brown, Siim‐Kaarel Sepp, Sunil Mundra, Zhu-Hua Luo, T. K. Bose, Tanel Vahter, Tarquin Netherway, Teng Yang, Tom W. May, Torda Varga, Wei Li, Victor Rafael Matos Coimbra, Virton Rodrigo Targino de Oliveira, Vítor Xavier de Lima, Vladimir Mikryukov, Yong‐Zhong Lu, Yosuke Matsuda, Yumiko Miyamoto, Urmas Kõljalg, Leho Tedersoo

1183Citations signalées, ce qui n’est pas une note de qualité

81Institutions déclarées

31Pays d’affiliation déclarés

Rattachement africain : ee, se, no, us, dk, cz, it, cl, cn, es, pl, th, nl, nz, br, ru, co, mx, gb, be, in, de, ir, hu, jp, cr, lv, au, bd, ae, Afrique du Sud. Niveau de preuve : code pays fourni par la source.

Le résumé fourni par la source

The cryptic lifestyle of most fungi necessitates molecular identification of the guild in environmental studies. Over the past decades, rapid development and affordability of molecular tools have tremendously improved insights of the fungal diversity in all ecosystems and habitats. Yet, in spite of the progress of molecular methods, knowledge about functional properties of the fungal taxa is vague and interpretation of environmental studies in an ecologically meaningful manner remains challenging. In order to facilitate functional assignments and ecological interpretation of environmental studies we introduce a user friendly traits and character database FungalTraits operating at genus and species hypothesis levels. Combining the information from previous efforts such as FUNGuild and FunFun together with involvement of expert knowledge, we reannotated 10,210 and 151 fungal and Stramenopila genera, respectively. This resulted in a stand-alone spreadsheet dataset covering 17 lifestyle related traits of fungal and Stramenopila genera, designed for rapid functional assignments of environmental studies. In order to assign the trait states to fungal species hypotheses, the scientific community of experts manually categorised and assigned available trait information to 697,413 fungal ITS sequences. On the basis of those sequences we were able to summarise trait and host information into 92,623 fungal species hypotheses at 1% dissimilarity threshold.

Ce résumé expose les affirmations des auteurs. BNTIC ne l’interprète pas comme une validation indépendante des résultats.

Le contrôle bibliographique ouvert

DOI retrouvé dans Crossref DOI retrouvé ; titre concordant.

Titre Crossref: FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles
Date Crossref: 01/11/2020
Éditeur: BioAcademic Press
Type: journal-article

Ce recoupement confirme des métadonnées liées au DOI. Il ne confirme ni la méthode ni les conclusions de l’étude, et il ne compte pas comme une seconde source scientifique indépendante.

Les institutions déclarées

University of Tartu Natural History Museum and Botanical Garden University of Tartu Swedish University of Agricultural Sciences University of Oslo University of Hawaiʻi at Mānoa University of Copenhagen Purdue University Northwest Czech Academy of Sciences Czech Academy of Sciences, Institute of Microbiology University of Turin Harvard University Evolutionary Genomics (United States)Universidad Mayor Universidad Santo Tomás Norwegian Institute for Nature Research University of Electronic Science and Technology of China Institut de Biologia Evolutiva University of Warsaw Swedish Museum of Natural History Mae Fah Luang University Westerdijk Fungal Biodiversity Institute University of Florida Ministry for Primary Industries Qujing Normal University Federal Institute of São Paulo Instituto de Botânica Estonian University of Life Sciences Universidade Federal de Pernambuco Oak Ridge Associated Universities Oak Ridge Institute for Science and Education All-Russian Institute of Plant Protection Universidad del Rosario Universidade Federal Rural da Amazônia Universidad Nacional Autónoma de México Aberystwyth University Institute of Biological, Environmental and Rural Sciences Ghent University West Bengal State University Beijing Forestry University Jawaharlal Nehru Tropical Botanic Garden and Research Institute Pontificia Universidad Católica de Chile Center of Applied Ecology & Sustainability University of O'Higgins University of Minnesota Kunming Institute of Botany Chinese Academy of Sciences Field Museum of Natural History University of Potsdam Leibniz Institute of Freshwater Ecology and Inland Fisheries University of Guilan University of Alaska Fairbanks Eszterhazy Karoly Catholic University HUN-REN Centre for Energy Research Tokyo Kasei University The University of Tokyo Universidad de Costa Rica Latvian State Forest Research Institute "Silava"The University of Sydney Westmead Hospital Westmead Institute for Medical Research University of Szeged HUN-REN Szegedi Biológiai Kutatóközpont Institute of Microbiology Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. - Hans-Knöll-Institut (HKI)Purdue University West Lafayette Uppsala University Institute of Plant and Animal Ecology Manaaki Whenua – Landcare Research University of Chittagong University of Memphis United Arab Emirates University Ministry of Natural Resources Fujian Institute of Oceanography University of Pretoria Institute of Soil Science Royal Botanic Garden Sydney Royal Botanic Gardens Victoria Ocean University of China Guizhou Institute of Technology Mie University Hokkaido University

Une affiliation ne permet pas de déduire la nationalité d’un auteur.

Les sujets associés

Mycorrhizal Fungi and Plant InteractionsPlant Pathogens and Fungal DiseasesFungal Biology and Applications

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