State Key Laboratory of Tree Genetics and Breeding

The hypoxia–gut microbiota–bile acid axis: mechanistic crosstalk and therapeutic opportunities

Xu‐Feng Zhang, Guozhen Duan, Mingliang Shi, Hong Wu et autres

Hypoxia is a central feature of a wide range of pathological conditions; however, the metabolic regulatory networks underlying hypoxic adaptation remain incompletely understood. In recent years, accumulating evidence suggests that bile acids, traditionally regarded as metabolic end products, also function as signaling …

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Seasonal allometric coordination of growth, pigments and roots in Pinus yunnanensis seedlings of different quality grades

Qingxue Zhang, Qibo Wang, Ye Jiang, Tianyi Xue et autres

Heterologous Expression of SoMYB1 Derived from Syringa oblata Enhances Cyanidin Biosynthesis in Tobacco

Yinglong Yang, Xinyi Du, Pan Yang, Bin Wang et autres

Syringa oblata is a renowned flowering shrub, yet the functional studies on the regulatory factors governing its flower color formation remain limited. In this study, a new MYB transcription factor, named SoMYB1, was isolated from the petals of Syringa oblata by the …

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Rapid Growth, Uneven Translation: Changes in Web of Science–Indexed University Student Mental Health Research, 2017–2025 — Reproducibility Package

Bo Li, Jing Zhang

This archive contains the Stage 4.5 verified reproducibility package for the manuscript “Rapid Growth, Uneven Translation: Changes in Web of Science–Indexed University Student Mental Health Research, 2017–2025.” It supersedes the Stage 4b package. This version makes the co-citation workflow deterministic across Python …

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Rapid Growth, Uneven Translation: Changes in Web of Science–Indexed University Student Mental Health Research, 2017–2025 — Reproducibility Package

Bo Li, Jing Zhang

This archive contains the Stage 4.5 verified reproducibility package for the manuscript “Rapid Growth, Uneven Translation: Changes in Web of Science–Indexed University Student Mental Health Research, 2017–2025.” It supersedes the Stage 4b package. This version makes the co-citation workflow deterministic across Python …

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Rapid Growth, Uneven Translation: Changes in Web of Science–Indexed University Student Mental Health Research, 2017–2025 — Reproducibility Package

Bo Li, Jing Zhang

This archive contains the Stage 4b reproducibility package for the manuscript “Rapid Growth, Uneven Translation: Changes in Web of Science–Indexed University Student Mental Health Research, 2017–2025.” It includes analysis code, aggregated results, validation and audit materials, figures, tables, and documentation. It does …

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Integrated Transcriptome and Metabolome Analysis Reveals Defense Mechanisms and Key Antifungal Metabolites in Camellia oleifera under Sodium Pheophorbide a Treatment

Zisiye Mu, Heying Zhou, Xulong Shi, Guangyuan Ren et autres

Sodium pheophorbide a (SPA) exhibits positive effects against leaf spot blight caused by Diaporthe mahothocarpus in Camellia oleifera, but how SPA affects resistance to leaf spot blight is currently unknown. This investigation represents the inaugural application of integrated transcriptomic and metabolomic profiling …

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An Exploratory Transcriptomic Classification Model for Psoriasis Based on Apoptosis-Associated and Proliferation–Apoptosis-Coupled Genes Using Explainable Machine Learning

Liu X, Wenqing Fu, Jiachen Li, Mengyang Jing et autres

This study aimed to integrate apoptosis-associated and proliferation–apoptosis-coupled transcriptomic signatures with explainable machine learning to construct an exploratory molecular classification model for psoriasis. Transcriptomic datasets GSE30999 and GSE53552 were merged as the skin-tissue training cohort, and GSE55201, a whole-blood transcriptomic dataset, was …

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Comparative transcriptional analysis reveals the regulatory network in response to salt stress in hybrid poplar

Yuhan Wu, Mengqi Zhang, Peng Jin, Sidan Hong et autres

Understanding the regulatory responses to salt stress in poplar is crucial for developing tolerant varieties that thrive in saline soils, thereby supporting wood production and reducing land degradation. In this study, a comparative transcriptional analysis was conducted on half-sib offspring exhibiting contrasting …

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Establishment and optimisation of a transient transformation system for Taxus × media

Yang Menglu, Du Yuqing, Xu Fan, Wu Chenwei et autres

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PoplarFormer: A hybrid deep learning architecture for ordinal severity grading of poplar black spot disease

Cheng Jin, Shichang Wu, Yingnan P. Chen, Chenchen Guo et autres

Poplar black spot disease, caused by Marssonina brunnea (Ellis & Everh.) Magnus, is a major foliar disease that endangers the global poplar industry, seriously threatening timber yield and quality. The assessment of the disease severity has long relied on subjective visual inspection. …

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Identification and intra-genus conservation analysis of non-conventional peptides in hybrid poplar 84K

Ying-Da Chen, Jian Tang, Xin-Yue Wang, Xin Lin et autres

The functional roles of non-conventional peptides (NCPs) encoded by short open reading frames (sORFs) are increasingly recognized. However, their evolutionary conservation among closely related species remains largely unexplored. This study presented a genome-wide identification of NCPs in the hybrid poplar 84K (P. …

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