Accès ouvert
2026
preprint
OpenAlex
Amos Muench, Jonathan Thielmann, Reduan Achtibat, Maximilian Dreyer et autres
Recent advances in pathology foundation models have enabled accurate prediction of spatial transcriptomics (ST) from routine H&E images. However, existing explainability methods for vision transformer (ViT)-based models are largely limited to local heatmaps and do not reveal how morphological concepts contribute to …
Accès ouvert
2026
preprint
OpenAlex
Amos Muench, Jonathan Thielmann, Reduan Achtibat, Maximilian Dreyer et autres
Recent advances in pathology foundation models have enabled accurate prediction of spatial transcriptomics (ST) from routine H&E images. However, existing explainability methods for vision transformer (ViT)-based models are largely limited to local heatmaps and do not reveal how morphological concepts contribute to …
Accès ouvert
2025
other
OpenAlex
Giulia Montuori, Fengyu Tu, Di Qin, Rachel Schmargon et autres
Supplementary Figure S2 shows simulation results of clonogenic assays under copy number-dependent and -independent cell fitness
Accès ouvert
2025
other
OpenAlex
Giulia Montuori, Fengyu Tu, Di Qin, Rachel Schmargon et autres
Supplementary Figure S5 shows copy number dynamics in ecDNA vs. HSR neuroblastoma cells in response to cytotoxic and targeted therapies
Accès ouvert
2025
other
OpenAlex
Giulia Montuori, Fengyu Tu, Di Qin, Rachel Schmargon et autres
Supplementary Figure S4 provides computational and experimental models of ecDNA-dependent treatment responses in neuroblastoma
Accès ouvert
2025
other
OpenAlex
Giulia Montuori, Fengyu Tu, Di Qin, Rachel Schmargon et autres
Supplementary Table S4 contains information about the MYCN status of neuroblastoma patient samples used in Figure 1 and Supplementary Figure 1
Accès ouvert
2025
other
OpenAlex
Giulia Montuori, Fengyu Tu, Di Qin, Rachel Schmargon et autres
Supplementary Table S2 lists the GDCS compounds used in Supplementary Figure S4L
Accès ouvert
2025
other
OpenAlex
Giulia Montuori, Fengyu Tu, Di Qin, Rachel Schmargon et autres
Supplementary Table S3 contains information about the MYCN and TP53 status of cell lines used in Supplementary Figure S4L
Accès ouvert
2025
other
OpenAlex
Giulia Montuori, Fengyu Tu, Di Qin, Rachel Schmargon et autres
Abstract Extrachromosomal DNA (ecDNA) amplification enhances intercellular oncogene dosage variability and accelerates tumor evolution by violating foundational principles of genetic inheritance through its asymmetric mitotic segregation. Spotlighting high-risk neuroblastoma, we demonstrate how ecDNA amplification undermines the clinical efficacy of current therapies in …
Accès ouvert
2025
other
OpenAlex
Giulia Montuori, Fengyu Tu, Di Qin, Rachel Schmargon et autres
Supplementary Figure S1 characterises the MYCN amplification status, copy number heterogeneity and growth behaviour in neuroblastoma samples
Accès ouvert
2025
other
OpenAlex
Giulia Montuori, Fengyu Tu, Di Qin, Rachel Schmargon et autres
Supplementary Figure S7 demonstrates the impact of MYCN dosage on treatment response in neuroblastoma
Accès ouvert
2025
other
OpenAlex
Giulia Montuori, Fengyu Tu, Di Qin, Rachel Schmargon et autres
Supplementary Table S1 contains FISH proteomics datasets