Jessy R. Hapdei

Expanding the boundaries: regional connectivity in green turtle (Chelonia mydas) populations across Micronesia

Michael P. Jensen, Erin L. LaCasella, Donald R. Kobayashi, Amy B. Frey et autres

The importance of ocean currents in influencing the connectivity and dispersal of marine megafauna, including sea turtles, is becoming increasingly recognized. However, more comprehensive studies are needed on how these currents impact the genetic makeup and connectivity of green turtle Chelonia mydas …

dk, us (code pays fourni par la source)

Population structure of Pacific green turtles: a new perspective from microsatellite DNA variation

Suzanne E. Roden, John B. Horne, Michael P. Jensen, Nancy N. FitzSimmons et autres

This study builds upon the current understanding of green turtle population genetic structure in the Pacific that has largely been based on mitochondrial DNA (mtDNA), by examining nuclear DNA (nDNA) diversity, regional connectivity, and male-mediated gene flow. A total of 1,111 nesting …

us, dk, au, cr, mx, pf, cl (code pays fourni par la source)

Species and population specific gene expression in blood transcriptomes of marine turtles

Shreya M. Banerjee, Jamie Adkins Stoll, Camryn D. Allen, Jennifer M. Lynch et autres

BACKGROUND: Transcriptomic data has demonstrated utility to advance the study of physiological diversity and organisms' responses to environmental stressors. However, a lack of genomic resources and challenges associated with collecting high-quality RNA can limit its application for many wild populations. Minimally invasive …

us (code pays fourni par la source)

Additional file 4 of Species and population specific gene expression in blood transcriptomes of marine turtles

Shreya M. Banerjee, Jamie Adkins Stoll, Camryn D. Allen, Jennifer M. Lynch et autres

Additional file 4: Table S4. Annotation and orthogroup information for leatherback multi-tissue transcriptome assembly transcripts. Transcripts that did not match to a Gene Ontology (GO) ID are not included.

Additional file 2 of Species and population specific gene expression in blood transcriptomes of marine turtles

Shreya M. Banerjee, Jamie Adkins Stoll, Camryn D. Allen, Jennifer M. Lynch et autres

Additional file 2: Table S2. Annotation and orthogroup information for green turtle blood transcriptome assembly transcripts. Transcripts that did not match to a Gene Ontology (GO) ID are not included.

Additional file 7 of Species and population specific gene expression in blood transcriptomes of marine turtles

Shreya M. Banerjee, Jamie Adkins Stoll, Camryn D. Allen, Jennifer M. Lynch et autres

Additional file 7: Table S7. Differential orthogroup expression analyses results for comparisons between marine turtle species. Log fold change and adjusted p-values are listed for the green v. leatherback, green v. hawksbill, and leatherback v. hawksbill turtle comparisons.

Additional file 5 of Species and population specific gene expression in blood transcriptomes of marine turtles

Shreya M. Banerjee, Jamie Adkins Stoll, Camryn D. Allen, Jennifer M. Lynch et autres

Additional file 5: Table S5. Species-specific orthogroups. Orthogroups and the transcripts that belong to each orthogroup from each species-specific blood transcriptome.

Additional file 6 of Species and population specific gene expression in blood transcriptomes of marine turtles

Shreya M. Banerjee, Jamie Adkins Stoll, Camryn D. Allen, Jennifer M. Lynch et autres

Additional file 6: Table S6. Tissue-specific orthogroups. Orthogroups and the transcripts that belong to each orthogroup from each individual tissue-type leatherback transcriptome.

Additional file 3 of Species and population specific gene expression in blood transcriptomes of marine turtles

Shreya M. Banerjee, Jamie Adkins Stoll, Camryn D. Allen, Jennifer M. Lynch et autres

Additional file 3: Table S3. KEGG pathway analyses results. KEGG pathways for the green turtle transcriptome and the leatherback multi-tissue assembly.

Additional file 1 of Species and population specific gene expression in blood transcriptomes of marine turtles

Shreya M. Banerjee, Jamie Adkins Stoll, Camryn D. Allen, Jennifer M. Lynch et autres

Additional file 1: Table S1. Sample metadata. Detailed metadata, raw read count, and the percent of reads that map to green (Chelonia mydas) turtle hemoglobin genes for each individual (n = 43) included in this study. Individuals without straight carapace length (SCL) …

Additional file 9 of Species and population specific gene expression in blood transcriptomes of marine turtles

Shreya M. Banerjee, Jamie Adkins Stoll, Camryn D. Allen, Jennifer M. Lynch et autres

Additional file 9: Table S9. Functional enrichment analysis results. Functional enrichment analysis results for contrasts between green turtle foraging aggregations.

Additional file 8 of Species and population specific gene expression in blood transcriptomes of marine turtles

Shreya M. Banerjee, Jamie Adkins Stoll, Camryn D. Allen, Jennifer M. Lynch et autres

Additional file 8: Table S8. Differential gene expression analyses results for comparisons between green turtle foraging aggregations. Log fold change and adjusted p-values are listed for the California and Hawai’i, California and the Commonwealth of the Northern Mariana Islands (CNMI), and Hawai’i …